SMTL ID : 3sv5.1

Engineered medium-affinity halide-binding protein derived from YFP: iodide complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 15 residues within 4Å: Chain A: X.66, T.68, F.83, Q.93, R.95, V.149, I.151, A.162, F.164, Q.182, N.184, L.200, Y.202 Ligands: IOD.2, FMT.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.68, A:T.68, A:Q.93, A:R.95, A:Q.182, A:Y.202

4 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 10 residues within 4Å: Chain A: X.66, T.68, R.95, V.149, I.151, Q.182, L.200, Y.202 Ligands: EDO.1, FMT.4 Ligand excluded by PLIP IOD.3: 6 residues within 4Å: Chain A: T.64, Q.93, E.94, R.95, T.107, A.109 Ligand excluded by PLIP IOD.5: 5 residues within 4Å: Chain A: P.57, W.58, P.59, H.138, Y.142 Ligand excluded by PLIP IOD.6: 2 residues within 4Å: Chain A: S.174, V.175 Ligand excluded by PLIP

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4: 9 residues within 4Å: Chain A: L.43, X.66, V.67, T.68, Y.202, E.221, V.223 Ligands: EDO.1, IOD.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.67, A:T.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grimley, J.S. et al., Visualization of Synaptic Inhibition with an Optogenetic Sensor Developed by Cell-Free Protein Engineering Automation. J.Neurosci. (2013)

Release Date

2012-07-18

Peptides

Green fluorescent protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Green fluorescent protein

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