SMTL ID : 3sv8.1

Crystal structure of NS3/4A protease variant D168A in complex with Telaprevir

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x SV6: (1S,3aR,6aS)-2-[(2S)-2-({(2S)-2-cyclohexyl-2-[(pyrazin-2-ylcarbonyl)amino]acetyl}amino)-3,3-dimethylbutanoyl]-N-[(2R,3S)-1-(cyclopropylamino)-2-hydroxy-1-oxohexan-3-yl]octahydrocyclopenta[c]pyrrole-1-carboxamide(Covalent)

SV6.1: 15 residues within 4Å: Chain A: Q.62, T.63, H.78, R.144, L.156, K.157, G.158, S.159, S.160, F.175, R.176, A.177, A.178, V.179, S.180 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Q.62, A:L.156, A:K.157, A:F.175, A:A.177, A:A.178 Hydrogen bonds: A:K.157, A:G.158, A:S.160, A:R.176, A:A.178, A:A.178, A:S.180

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: Y.126, C.166, P.167, G.169 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.167, A:G.169 Water bridges: A:A.26

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.118, T.119, C.120, C.166 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.118, A:C.120, A:C.166, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Romano, K.P. et al., The Molecular Basis of Drug Resistance against Hepatitis C Virus NS3/4A Protease Inhibitors. Plos Pathog. (2012)

Release Date

2012-09-05

Peptides

NS3 protease, NS4A protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NS3 protease, NS4A protein