SMTL ID : 3sva.2 (1 other biounit)

Crystal structure of V57D mutant of human cystatin C

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.02 Å

Oligo State

homo-octamer

Ligands

8 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 4 residues within 4Å: Chain A: R.51, R.53 Chain G: T.72 Chain H: Y.42 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.51, A:R.51 PEG.3: 4 residues within 4Å: Chain B: R.51, R.53 Chain E: T.72 Chain F: Y.42 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.51, B:R.51 PEG.5: 4 residues within 4Å: Chain C: R.51, R.53 Chain G: Y.42 Chain H: T.72 3 PLIP interactions: 1 interactions with chain G, 2 interactions with chain C Hydrogen bonds: G:Y.42, C:R.51, C:R.51 PEG.7: 4 residues within 4Å: Chain D: R.51, R.53 Chain E: Y.42 Chain F: T.72 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain E Hydrogen bonds: D:R.51, D:R.51, E:Y.42 PEG.9: 4 residues within 4Å: Chain A: Y.42 Chain B: T.72 Chain E: R.51, R.53 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:R.51, E:R.51 PEG.11: 4 residues within 4Å: Chain C: Y.42 Chain D: T.72 Chain F: R.51, R.53 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain F Hydrogen bonds: C:Y.42, F:R.51, F:R.51 PEG.13: 4 residues within 4Å: Chain A: T.72 Chain B: Y.42 Chain G: R.51, R.53 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:R.51, G:R.51 PEG.15: 4 residues within 4Å: Chain C: T.72 Chain D: Y.42 Chain H: R.51, R.53 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain H Hydrogen bonds: D:Y.42, H:R.51, H:R.51

8 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 1 residues within 4Å: Chain A: L.47 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.24 ACT.4: 1 residues within 4Å: Chain B: L.47 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.24 ACT.6: 1 residues within 4Å: Chain C: L.47 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.24 ACT.8: 1 residues within 4Å: Chain D: L.47 1 PLIP interactions: 1 interactions with chain D Salt bridges: D:R.24 ACT.10: 1 residues within 4Å: Chain E: L.47 1 PLIP interactions: 1 interactions with chain E Salt bridges: E:R.24 ACT.12: 1 residues within 4Å: Chain F: L.47 1 PLIP interactions: 1 interactions with chain F Salt bridges: F:R.24 ACT.14: 1 residues within 4Å: Chain G: L.47 1 PLIP interactions: 1 interactions with chain G Salt bridges: G:R.24 ACT.16: 1 residues within 4Å: Chain H: L.47 1 PLIP interactions: 1 interactions with chain H Salt bridges: H:R.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Orlikowska, M. et al., Structural characterization of V57D and V57P mutants of human cystatin C, an amyloidogenic protein. Acta Crystallogr.,Sect.D (2013)

Release Date

2012-08-01

Peptides

Cystatin-C: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

Cystatin-C

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