SMTL ID : 3sw5.1

Crystal structure of inorganic pyrophosphatase from Bartonella henselae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

6 x LMR: (2S)-2-hydroxybutanedioic acid(Non-covalent)

LMR.1: 7 residues within 4Å: Chain A: N.80, T.81, R.82, T.119, R.121, Y.122 Chain C: F.49 13 PLIP interactions: 11 interactions with chain A, 1 interactions with chain E, 1 interactions with chain C Hydrogen bonds: A:N.80, A:T.81, A:R.82, A:T.119, A:R.121, A:Y.122 Water bridges: A:T.81, A:R.82, A:T.119, E:Q.138 Salt bridges: A:R.82, A:R.121 Hydrophobic interactions: C:F.49 LMR.2: 7 residues within 4Å: Chain B: N.80, T.81, R.82, T.119, R.121, Y.122 Chain D: F.49 14 PLIP interactions: 1 interactions with chain F, 12 interactions with chain B, 1 interactions with chain D Water bridges: F:Q.138, B:R.82, B:R.82 Hydrogen bonds: B:N.80, B:T.81, B:T.81, B:R.82, B:T.119, B:T.119, B:R.121, B:Y.122 Salt bridges: B:R.82, B:R.121 Hydrophobic interactions: D:F.49 LMR.3: 7 residues within 4Å: Chain C: N.80, T.81, R.82, T.119, R.121, Y.122 Chain F: F.49 14 PLIP interactions: 12 interactions with chain C, 1 interactions with chain F, 1 interactions with chain D Hydrogen bonds: C:N.80, C:T.81, C:T.81, C:R.82, C:T.119, C:T.119, C:R.121 Water bridges: C:T.81, C:R.82, C:R.82, D:Q.138 Salt bridges: C:R.82, C:R.121 Hydrophobic interactions: F:F.49 LMR.4: 7 residues within 4Å: Chain D: N.80, T.81, R.82, T.119, R.121, Y.122 Chain E: F.49 14 PLIP interactions: 12 interactions with chain D, 1 interactions with chain E, 1 interactions with chain C Hydrogen bonds: D:N.80, D:T.81, D:T.81, D:R.82, D:T.119, D:T.119, D:R.121, D:Y.122 Water bridges: D:R.82, D:R.82, C:Q.138 Salt bridges: D:R.82, D:R.121 Hydrophobic interactions: E:F.49 LMR.5: 7 residues within 4Å: Chain B: F.49 Chain E: N.80, T.81, R.82, T.119, R.121, Y.122 13 PLIP interactions: 1 interactions with chain A, 11 interactions with chain E, 1 interactions with chain B Water bridges: A:Q.138, E:R.82, E:R.82 Hydrogen bonds: E:N.80, E:T.81, E:R.82, E:T.119, E:R.121, E:Y.122, E:Y.122 Salt bridges: E:R.82, E:R.121 Hydrophobic interactions: B:F.49 LMR.6: 7 residues within 4Å: Chain A: F.49 Chain F: N.80, T.81, R.82, T.119, R.121, Y.122 14 PLIP interactions: 12 interactions with chain F, 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: F:N.80, F:T.81, F:T.81, F:R.82, F:T.119, F:T.119, F:R.121 Water bridges: F:T.81, F:R.82, F:R.82, B:Q.138 Salt bridges: F:R.82, F:R.121 Hydrophobic interactions: A:F.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

SSGCID et al., Crystal structure of inorganic pyrophosphatase from Bartonella henselae. To be Published

Release Date

2011-08-10

Peptides

Inorganic pyrophosphatase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Inorganic pyrophosphatase