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SMTL ID : 3sw6.1
Crystal structure of Methanothermobacter thermautotrophicus orotidine 5'-monophosphate decarboxylase covalently modified by 5-fluoro-6-azido-UMP
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.50 Å
Oligo State
homo-dimer
Ligands
2 x
5FU
:
5-FLUORO-URIDINE-5'-MONOPHOSPHATE
(Covalent)
5FU.1:
16 residues within 4Å:
Chain A:
D.20
,
K.42
,
D.70
,
K.72
,
L.123
,
M.126
,
S.127
,
P.180
,
V.182
,
Q.185
,
V.201
,
G.202
,
R.203
Chain B:
D.75
,
I.76
,
T.79
15
PLIP interactions
:
1 interactions with chain B
,
14 interactions with chain A
Hydrogen bonds:
B:D.75
,
A:D.20
,
A:K.42
,
A:K.72
,
A:S.127
,
A:S.127
,
A:S.127
,
A:Q.185
,
A:G.202
,
A:R.203
Water bridges:
A:G.181
,
A:G.181
,
A:G.181
,
A:S.204
Salt bridges:
A:R.203
5FU.2:
16 residues within 4Å:
Chain A:
D.75
,
I.76
,
T.79
Chain B:
D.20
,
K.42
,
D.70
,
K.72
,
L.123
,
M.126
,
S.127
,
P.180
,
V.182
,
Q.185
,
V.201
,
G.202
,
R.203
17
PLIP interactions
:
15 interactions with chain B
,
2 interactions with chain A
Hydrogen bonds:
B:D.20
,
B:K.42
,
B:K.72
,
B:S.127
,
B:S.127
,
B:S.127
,
B:Q.185
,
B:G.202
,
B:R.203
,
A:D.75
,
A:T.79
Water bridges:
B:D.20
,
B:G.181
,
B:G.181
,
B:G.181
,
B:S.204
Salt bridges:
B:R.203
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Liu, Y. et al., Crystal structure of Methanothermobacter thermautotrophicus orotidine 5'-monophosphate decarboxylase covalently modified by 5-fluoro-6-azido-UMP. To be Published
Release Date
2012-05-02
Peptides
Orotidine 5'-phosphate decarboxylase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
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Secondary Structure
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Orotidine 5'-phosphate decarboxylase
Toggle Identical (AB)
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