SMTL ID : 3sw8.1

Strep Peptide Deformylase with a time dependent dichlorobenzamide-reverse hydroxamic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 5 residues within 4Å: Chain A: Q.77, C.130, H.173, H.177 Ligands: 5LI.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.130, A:H.173, A:H.177

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: S.118, R.146 6 PLIP interactions: 6 interactions with chain A Water bridges: A:S.116, A:H.117, A:V.119, A:V.119, A:R.146 Salt bridges: A:R.146 SO4.4: 4 residues within 4Å: Chain A: M.50, E.106, A.107, I.108 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.108 SO4.5: 2 residues within 4Å: Chain A: H.144, R.186 5 PLIP interactions: 5 interactions with chain A Water bridges: A:H.144, A:R.186, A:R.186 Salt bridges: A:H.144, A:R.186

1 x 5LI: 2,3-dichloro-N-{2-[formyl(hydroxy)amino]ethyl}benzamide(Non-covalent)

5LI.3: 15 residues within 4Å: Chain A: G.70, V.71, G.72, Q.77, L.124, E.128, G.129, C.130, L.131, I.169, V.170, H.173, E.174, H.177 Ligands: NI.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.71, A:L.124, A:E.128 Hydrogen bonds: A:V.71, A:G.72, A:Q.77, A:G.129, A:L.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Totoritis, R. et al., Understanding the origins of time-dependent inhibition by polypeptide deformylase inhibitors. Biochemistry (2011)

Release Date

2011-07-27

Peptides

Peptide deformylase 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

Peptide deformylase 3

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