SMTL ID : 3swc.3 (2 other biounits)

GLP (G9a-like protein) SET domain in complex with Dnmt3aK44me2 peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.33 Å

Oligo State

hetero-2-2-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain A: C.81, C.94, C.124, C.128, C.130 Ligands: ZN.2, ZN.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.81, A:C.94, A:C.124, A:C.128 ZN.2: 7 residues within 4Å: Chain A: C.81, C.87, C.124, C.130, C.134 Ligands: ZN.1, ZN.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.87, A:C.124, A:C.130, A:C.134 ZN.3: 7 residues within 4Å: Chain A: C.81, C.83, C.87, C.92, C.124 Ligands: ZN.1, ZN.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.81, A:C.83, A:C.87, A:C.92 ZN.4: 4 residues within 4Å: Chain A: C.222, C.275, C.277, C.282 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.222, A:C.275, A:C.277, A:C.282 ZN.6: 6 residues within 4Å: Chain C: C.81, C.94, C.124, C.128 Ligands: ZN.7, ZN.8 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.81, C:C.94, C:C.124, C:C.128 ZN.7: 6 residues within 4Å: Chain C: C.87, C.124, C.130, C.134 Ligands: ZN.6, ZN.8 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.87, C:C.124, C:C.130, C:C.134 ZN.8: 7 residues within 4Å: Chain C: C.81, C.83, C.87, C.92, C.124 Ligands: ZN.6, ZN.7 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.81, C:C.83, C:C.87, C:C.92 ZN.9: 4 residues within 4Å: Chain C: C.222, C.275, C.277, C.282 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.222, C:C.275, C:C.277, C:C.282

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.5: 16 residues within 4Å: Chain A: M.155, G.156, W.157, S.191, Y.192, R.216, F.217, N.219, H.220, Y.261, F.265, F.273, S.274, C.275, R.276 Chain B: R.9 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:W.157, A:W.157, A:Y.192, A:Y.192, A:N.219, A:H.220, A:H.220, A:R.276 SAH.10: 19 residues within 4Å: Chain C: M.155, G.156, W.157, S.191, Y.192, R.216, F.217, I.218, N.219, H.220, Y.261, F.265, W.266, F.273, S.274, C.275, R.276, C.277 Chain D: R.9 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:W.157, C:W.157, C:Y.192, C:N.219, C:H.220, C:H.220, C:R.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, Y. et al., MPP8 mediates the interactions between DNA methyltransferase Dnmt3a and H3K9 methyltransferase GLP/G9a. Nat Commun (2011)

Release Date

2011-11-30

Peptides

Histone-lysine N-methyltransferase EHMT1: AC
DNA (cytosine-5)-methyltransferase 3A: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

B
P

D
Q

Histone-lysine N-methyltransferase EHMT1

DNA (cytosine-5)-methyltransferase 3A

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