SMTL ID : 3swt.3 (2 other biounits)

Crystal Structure of the Taurine catabolism dioxygenase, TauD from Mycobacterium marinum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-tetramer

Ligands

4 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: H.102, D.104, H.259, R.274 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.102, A:D.104, A:H.259, H2O.1 FE.3: 4 residues within 4Å: Chain B: H.102, D.104, H.259, R.274 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.102, B:D.104, B:H.259, H2O.7 FE.5: 4 residues within 4Å: Chain C: H.102, D.104, H.259, R.274 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.102, C:D.104, C:H.259, H2O.14 FE.7: 4 residues within 4Å: Chain D: H.102, D.104, H.259, R.274 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.102, D:D.104, D:H.259, H2O.21

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: W.101, R.260 Chain B: P.236 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.260 EDO.4: 3 residues within 4Å: Chain A: P.236 Chain B: W.101, R.260 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.260

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 4 residues within 4Å: Chain C: T.121, L.122, E.245, S.246 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:L.122, C:S.246 Water bridges: C:V.120, C:T.121 PEG.8: 4 residues within 4Å: Chain D: T.121, L.122, E.245, S.246 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:L.122, D:S.246 Water bridges: D:V.120, D:T.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Increasing the structural coverage of tuberculosis drug targets. Tuberculosis (Edinb) (2015)

Release Date

2011-08-03

Peptides

Taurine catabolism dioxygenase, TauD: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
B

D
B

Taurine catabolism dioxygenase, TauD

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