SMTL ID : 3sy7.1

Improved crystal structure of Pseudomonas aeruginosa OprD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

8 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)

C8E.1: 5 residues within 4Å: Chain A: N.25, Y.27, W.42, L.411, V.413 No protein-ligand interaction detected (PLIP) C8E.2: 2 residues within 4Å: Chain A: T.55, F.61 No protein-ligand interaction detected (PLIP) C8E.3: 5 residues within 4Å: Chain A: V.63, G.102, A.103, W.115, G.116 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.63 Hydrogen bonds: A:W.115 Water bridges: A:E.117 C8E.4: 4 residues within 4Å: Chain A: T.48, Y.68, S.98, A.100 No protein-ligand interaction detected (PLIP) C8E.5: 7 residues within 4Å: Chain A: G.155, D.185, F.186, I.187, G.203, A.204, E.205 No protein-ligand interaction detected (PLIP) C8E.6: 8 residues within 4Å: Chain A: L.150, G.188, G.189, R.190, Y.191, A.199, L.201, G.203 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.201 C8E.7: 5 residues within 4Å: Chain A: Y.213, Y.214, L.215, I.235 Ligands: C8E.8 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.213, A:Y.213 C8E.8: 2 residues within 4Å: Chain A: Y.213 Ligands: C8E.7 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eren, E. et al., Substrate Specificity within a Family of Outer Membrane Carboxylate Channels. Plos Biol. (2012)

Release Date

2012-02-08

Peptides

Porin D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Porin D