SMTL ID : 3syu.1

Re-refined coordinates for pdb entry 1det - ribonuclease T1 carboxymethylated at GLU 58 in complex with 2'GMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain A: G.30, E.31 2 PLIP interactions: 2 interactions with chain A Water bridges: A:T.32, A:T.32 NA.2: 1 residues within 4Å: Chain A: G.97 No protein-ligand interaction detected (PLIP)

1 x 2GP: GUANOSINE-2'-MONOPHOSPHATE(Non-covalent)

2GP.3: 13 residues within 4Å: Chain A: H.40, K.41, Y.42, N.43, N.44, Y.45, E.46, E.58, H.92, N.98, N.99, F.100 Ligands: UNX.4 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:H.40, A:Y.42, A:Y.42, A:N.43, A:N.43, A:N.44, A:Y.45, A:N.98 Salt bridges: A:E.46

1 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.4: 3 residues within 4Å: Chain A: N.98, N.99 Ligands: 2GP.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smart, O.S. et al., Exploiting structure similarity in refinement: automated NCS and target-structure restraints in BUSTER. Acta Crystallogr.,Sect.D (2012)

Release Date

2012-03-28

Peptides

Guanyl-specific ribonuclease T1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Guanyl-specific ribonuclease T1

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