- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x DCQ: 2-DECYL-5,6-DIMETHOXY-3-METHYLCYCLOHEXA-2,5-DIENE-1,4-DIONE(Non-covalent)
DCQ.2: 14 residues within 4Å:- Chain A: T.14, F.44, P.46, G.325, Y.326, V.358, F.360, I.371, K.394, F.397, Y.414, K.416
- Chain B: K.420
- Ligands: FAD.1
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:Y.326, A:I.371, A:F.397, A:F.397, A:Y.414, A:K.416
DCQ.11: 14 residues within 4Å:- Chain A: K.420
- Chain B: T.14, F.44, P.46, G.325, Y.326, V.358, F.360, I.371, K.394, F.397, Y.414, K.416
- Ligands: FAD.10
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:Y.326, B:I.371, B:F.397, B:F.397, B:Y.414, B:K.416
- Hydrogen bonds: B:Y.414
- 6 x AU: GOLD ION(Non-covalent)
AU.3: 3 residues within 4Å:- Chain A: C.131, I.264
- Ligands: FAD.1
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:C.131
AU.4: 7 residues within 4Å:- Chain A: C.163, F.267, I.305, P.322, K.323
- Ligands: AU.5, H2S.9
No protein-ligand interaction detected (PLIP)AU.5: 6 residues within 4Å:- Chain A: C.163, P.322
- Ligands: FAD.1, AU.4, H2S.6, H2S.8
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:C.163
AU.12: 3 residues within 4Å:- Chain B: C.131, I.264
- Ligands: FAD.10
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:C.131
AU.13: 7 residues within 4Å:- Chain B: C.163, F.267, I.305, P.322, K.323
- Ligands: AU.14, H2S.18
No protein-ligand interaction detected (PLIP)AU.14: 6 residues within 4Å:- Chain B: C.163, P.322
- Ligands: FAD.10, AU.13, H2S.15, H2S.17
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:C.163
- 6 x H2S: HYDROSULFURIC ACID(Non-covalent)
H2S.6: 5 residues within 4Å:- Chain A: F.164, G.165, C.359
- Ligands: AU.5, H2S.8
No protein-ligand interaction detected (PLIP)H2S.8: 4 residues within 4Å:- Chain A: C.359
- Ligands: FAD.1, AU.5, H2S.6
No protein-ligand interaction detected (PLIP)H2S.9: 5 residues within 4Å:- Chain A: S.162, F.267, P.322, K.323
- Ligands: AU.4
No protein-ligand interaction detected (PLIP)H2S.15: 5 residues within 4Å:- Chain B: F.164, G.165, C.359
- Ligands: AU.14, H2S.17
No protein-ligand interaction detected (PLIP)H2S.17: 4 residues within 4Å:- Chain B: C.359
- Ligands: FAD.10, AU.14, H2S.15
No protein-ligand interaction detected (PLIP)H2S.18: 5 residues within 4Å:- Chain B: S.162, F.267, P.322, K.323
- Ligands: AU.13
No protein-ligand interaction detected (PLIP)- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.7: 4 residues within 4Å:- Chain A: M.1, H.6, H.100, D.102
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:M.1, A:M.1
- Water bridges: A:H.100
- Salt bridges: A:H.6, A:H.100
SO4.16: 4 residues within 4Å:- Chain B: M.1, H.6, H.100, D.102
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:M.1, B:M.1
- Water bridges: B:H.100
- Salt bridges: B:H.6, B:H.100
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cherney, M.M. et al., Structure-activity characterization of sulfide:quinone oxidoreductase variants. J.Struct.Biol. (2012)
- Release Date
- 2012-05-16
- Peptides
- Sulfide-quinone reductase, putative: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x DCQ: 2-DECYL-5,6-DIMETHOXY-3-METHYLCYCLOHEXA-2,5-DIENE-1,4-DIONE(Non-covalent)
- 6 x AU: GOLD ION(Non-covalent)
- 6 x H2S: HYDROSULFURIC ACID(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cherney, M.M. et al., Structure-activity characterization of sulfide:quinone oxidoreductase variants. J.Struct.Biol. (2012)
- Release Date
- 2012-05-16
- Peptides
- Sulfide-quinone reductase, putative: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A