- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x DCQ: 2-DECYL-5,6-DIMETHOXY-3-METHYLCYCLOHEXA-2,5-DIENE-1,4-DIONE(Non-covalent)
DCQ.2: 13 residues within 4Å:- Chain A: T.14, F.44, P.46, G.325, Y.326, V.358, F.360, I.371, K.394, F.397, Y.414
- Chain B: K.420
- Ligands: FAD.1
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:Y.326, A:V.358, A:F.360, A:I.371, A:F.397, A:F.397, A:Y.414
- Hydrogen bonds: A:Y.414
DCQ.10: 13 residues within 4Å:- Chain A: K.420
- Chain B: T.14, F.44, P.46, G.325, Y.326, V.358, F.360, I.371, K.394, F.397, Y.414
- Ligands: FAD.9
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:Y.326, B:V.358, B:F.360, B:I.371, B:F.397, B:F.397, B:Y.414
- 2 x S3H: TRISULFANE(Covalent)
- 8 x H2S: HYDROSULFURIC ACID(Non-covalent)
H2S.4: 6 residues within 4Å:- Chain A: T.324, V.358, C.359
- Ligands: FAD.1, S3H.3, H2S.6
No protein-ligand interaction detected (PLIP)H2S.5: 4 residues within 4Å:- Chain A: C.163
- Ligands: FAD.1, S3H.3, H2S.6
No protein-ligand interaction detected (PLIP)H2S.6: 8 residues within 4Å:- Chain A: F.164, G.165, P.166, C.359, F.370
- Ligands: S3H.3, H2S.4, H2S.5
No protein-ligand interaction detected (PLIP)H2S.7: 5 residues within 4Å:- Chain A: L.112, S.129, C.131, T.132, H.135
No protein-ligand interaction detected (PLIP)H2S.12: 6 residues within 4Å:- Chain B: T.324, V.358, C.359
- Ligands: FAD.9, S3H.11, H2S.14
No protein-ligand interaction detected (PLIP)H2S.13: 4 residues within 4Å:- Chain B: C.163
- Ligands: FAD.9, S3H.11, H2S.14
No protein-ligand interaction detected (PLIP)H2S.14: 8 residues within 4Å:- Chain B: F.164, G.165, P.166, C.359, F.370
- Ligands: S3H.11, H2S.12, H2S.13
No protein-ligand interaction detected (PLIP)H2S.15: 5 residues within 4Å:- Chain B: L.112, S.129, C.131, T.132, H.135
No protein-ligand interaction detected (PLIP)- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.8: 4 residues within 4Å:- Chain A: M.1, H.6, H.100, D.102
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:M.1, A:M.1
- Salt bridges: A:H.6, A:H.100
SO4.16: 4 residues within 4Å:- Chain B: M.1, H.6, H.100, D.102
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:M.1, B:M.1
- Salt bridges: B:H.6, B:H.100
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cherney, M.M. et al., Structure-activity characterization of sulfide:quinone oxidoreductase variants. J.Struct.Biol. (2012)
- Release Date
- 2012-05-16
- Peptides
- Sulfide-quinone reductase, putative: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x DCQ: 2-DECYL-5,6-DIMETHOXY-3-METHYLCYCLOHEXA-2,5-DIENE-1,4-DIONE(Non-covalent)
- 2 x S3H: TRISULFANE(Covalent)
- 8 x H2S: HYDROSULFURIC ACID(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cherney, M.M. et al., Structure-activity characterization of sulfide:quinone oxidoreductase variants. J.Struct.Biol. (2012)
- Release Date
- 2012-05-16
- Peptides
- Sulfide-quinone reductase, putative: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A