SMTL ID : 3t35.2 (1 other biounit)

Arabidopsis thaliana dynamin-related protein 1A in postfission state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.59 Å

Oligo State

homo-dimer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 22 residues within 4Å: Chain A: G.42, Q.43, S.44, S.45, G.46, K.47, S.48, S.49, R.62, T.211, K.212, I.213, D.214, L.215, V.240, V.241, N.242, R.243, S.244, Q.245, I.248 Chain B: D.217 15 PLIP interactions: 14 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.44, A:S.45, A:G.46, A:K.47, A:S.48, A:R.62, A:K.212, A:I.213, A:N.242, A:N.242 Water bridges: A:R.62 Salt bridges: A:K.47, A:R.62, A:D.214, B:D.217 GDP.2: 20 residues within 4Å: Chain A: D.217 Chain B: G.42, Q.43, S.44, S.45, G.46, K.47, S.48, S.49, R.62, T.211, K.212, D.214, L.215, V.241, N.242, R.243, S.244, Q.245, I.248 19 PLIP interactions: 18 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.44, B:S.45, B:G.46, B:K.47, B:S.48, B:S.49, B:S.49, B:R.62, B:K.212, B:N.242, B:N.242, B:S.244, B:Q.245 Water bridges: B:S.48, B:S.48 Salt bridges: B:K.47, B:R.62, B:D.214, A:D.217

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, L.M. et al., Structural basis for mechanochemical role of Arabidopsis thaliana dynamin-related protein in membrane fission. J Mol Cell Biol (2011)

Release Date

2012-06-06

Peptides

Dynamin-related protein 1A, LINKER, Dynamin-related protein 1A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Dynamin-related protein 1A, LINKER, Dynamin-related protein 1A

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