SMTL ID : 3t3c.1

Structure of HIV PR resistant patient derived mutant (comprising 22 mutations) in complex with DRV

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

1 x 017: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE(Non-covalent)

017.1: 22 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, D.30, V.32, A.48, G.49, I.50 Chain B: D.25, G.27, A.28, D.29, D.30, V.32, I.47, A.48, G.49, I.50, P.81, A.82, V.84 18 PLIP interactions: 10 interactions with chain B, 8 interactions with chain A Hydrophobic interactions: B:A.28, B:V.32, B:I.47, B:P.81, B:A.82, B:V.84 Hydrogen bonds: B:D.29, B:D.30, B:D.30, A:D.25, A:G.27, A:G.27, A:D.29, A:D.30 Salt bridges: B:D.25, A:D.25 Water bridges: A:I.50, A:I.50

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.2: 3 residues within 4Å: Chain A: P.1, V.11, C.67 No protein-ligand interaction detected (PLIP) BME.4: 4 residues within 4Å: Chain B: P.1, I.3, V.11, C.67 No protein-ligand interaction detected (PLIP)

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: R.8, E.21, V.22, L.23, A.82, N.83 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:L.23, A:N.83, A:N.83, A:N.83 Water bridges: A:E.21, A:D.35 Salt bridges: A:R.8 SO4.5: 5 residues within 4Å: Chain B: E.21, V.22, L.23, A.82, N.83 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.83, B:N.83, B:N.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kozisek, M. et al., Mutations in HIV-1 gag and pol Compensate for the Loss of Viral Fitness Caused by a Highly Mutated Protease. Antimicrob.Agents Chemother. (2012)

Release Date

2012-06-20

Peptides

HIV-1 protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HIV-1 protease