SMTL ID : 3t3w.1

Crystal structure of probable enoyl-COA hydratase from mycobacterium thermoresistibile

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-hexamer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: E.102, E.163, H.252, H.256 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.102, A:E.102, A:E.163, A:H.252, A:H.256, H2O.1 ZN.4: 4 residues within 4Å: Chain B: E.102, E.163, H.252, H.256 6 PLIP interactions: 5 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.102, B:E.102, B:E.163, B:H.252, B:H.256, H2O.8 ZN.7: 4 residues within 4Å: Chain C: E.102, E.163, H.252, H.256 6 PLIP interactions: 5 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.102, C:E.102, C:E.163, C:H.252, C:H.256, H2O.15 ZN.9: 4 residues within 4Å: Chain D: E.102, E.163, H.252, H.256 6 PLIP interactions: 5 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.102, D:E.102, D:E.163, D:H.252, D:H.256, H2O.30 ZN.11: 4 residues within 4Å: Chain E: E.102, E.163, H.252, H.256 6 PLIP interactions: 5 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:E.102, E:E.102, E:E.163, E:H.252, E:H.256, H2O.38 ZN.14: 4 residues within 4Å: Chain F: E.102, E.163, H.252, H.256 6 PLIP interactions: 5 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:E.102, F:E.102, F:E.163, F:H.252, F:H.256, H2O.41

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: R.174, K.177 Chain F: C.139, D.140, N.233, L.236 6 PLIP interactions: 5 interactions with chain F, 1 interactions with chain A Hydrogen bonds: F:D.140, A:K.177 Water bridges: F:E.170, F:E.170, F:N.233, F:N.233 EDO.6: 6 residues within 4Å: Chain B: R.174, K.177 Chain D: C.139, D.140, N.233, L.236 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:D.140, B:K.177 Water bridges: D:N.233, D:N.233 EDO.8: 6 residues within 4Å: Chain B: C.139, D.140, N.233, L.236 Chain C: R.174, K.177 5 PLIP interactions: 1 interactions with chain C, 4 interactions with chain B Hydrogen bonds: C:K.177, B:D.140 Water bridges: B:E.170, B:N.233, B:N.233 EDO.10: 6 residues within 4Å: Chain C: C.139, D.140, N.233, L.236 Chain D: R.174, K.177 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:D.140, D:K.177 Water bridges: C:E.170, C:N.233 EDO.13: 6 residues within 4Å: Chain A: C.139, D.140, N.233, L.236 Chain E: R.174, K.177 4 PLIP interactions: 1 interactions with chain E, 3 interactions with chain A Hydrogen bonds: E:K.177, A:D.140 Water bridges: A:N.233, A:N.233 EDO.16: 6 residues within 4Å: Chain E: C.139, D.140, N.233, L.236 Chain F: R.174, K.177 4 PLIP interactions: 3 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:D.140, F:K.177 Water bridges: E:N.233, E:N.233 EDO.17: 3 residues within 4Å: Chain F: M.20, Y.21, R.37 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:Y.21, F:R.37

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 9 residues within 4Å: Chain A: Q.193, T.194, G.195 Chain E: Q.193, T.194, G.195 Chain F: Q.193, T.194, G.195 8 PLIP interactions: 3 interactions with chain E, 4 interactions with chain A, 1 interactions with chain F Hydrogen bonds: E:Q.193, A:Q.193 Water bridges: E:T.194, E:T.194, A:A.192, A:Q.193, A:T.194, F:T.194 TRS.5: 9 residues within 4Å: Chain B: Q.193, T.194, G.195 Chain C: Q.193, T.194, G.195 Chain D: Q.193, T.194, G.195 9 PLIP interactions: 2 interactions with chain B, 4 interactions with chain C, 3 interactions with chain D Water bridges: B:A.192, B:Q.193, C:A.192, C:Q.193, C:T.194, D:T.194, D:T.194 Hydrogen bonds: C:Q.193, D:Q.193

2 x IOD: IODIDE ION(Non-functional Binders)

IOD.12: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.15: 2 residues within 4Å: Chain F: P.46, E.47 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Increasing the structural coverage of tuberculosis drug targets. Tuberculosis (Edinb) (2015)

Release Date

2011-09-14

Peptides

Enoyl-CoA hydratase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Enoyl-CoA hydratase