SMTL ID : 3t3y.1

Crystal structure of AlkB in complex with Fe(III) and 2-(3-hydroxypicolinomido)acetic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: H.121, D.123, H.177 Ligands: MD6.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.121, A:D.123, A:H.177, H2O.1

1 x MD6: N-[(3-hydroxypyridin-2-yl)carbonyl]glycine(Non-covalent)

MD6.2: 15 residues within 4Å: Chain A: N.110, Y.112, L.118, H.121, D.123, I.133, S.135, F.144, W.168, H.177, I.179, R.194, N.196, T.198 Ligands: FE.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.133, A:W.168 Hydrogen bonds: A:N.110, A:Y.112, A:Y.112, A:S.135 Water bridges: A:R.200, A:R.200, A:R.200 Salt bridges: A:R.194 pi-Stacking: A:W.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Woon, E.C. et al., Dynamic combinatorial mass spectrometry leads to inhibitors of a 2-oxoglutarate-dependent nucleic Acid demethylase. J.Med.Chem. (2012)

Release Date

2012-03-07

Peptides

Alpha-ketoglutarate-dependent dioxygenase AlkB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-ketoglutarate-dependent dioxygenase AlkB

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