SMTL ID : 3t9q.1 (2 other biounits)

Structure of the Phosphatase Domain of the Cell Fate Determinant SpoIIE from Bacillus subtilis (Mn presoaked)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.76 Å

Oligo State

homo-tetramer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: D.161, D.210 Chain B: D.43 5 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: A:D.161, A:D.210, B:D.43, H2O.1, H2O.1 MN.3: 3 residues within 4Å: Chain A: D.43 Chain B: D.161, D.210 5 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: A:D.43, B:D.210, B:D.210, H2O.1, H2O.2 MN.4: 3 residues within 4Å: Chain C: D.161, D.210 Chain D: D.43 5 PLIP interactions: 2 interactions with chain C, 1 interactions with chain D, 2 Ligand-Water interactions Metal complexes: C:D.161, C:D.210, D:D.43, H2O.2, H2O.2 MN.6: 3 residues within 4Å: Chain C: D.43 Chain D: D.161, D.210 5 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: D:D.210, D:D.210, C:D.43, H2O.3, H2O.3

2 x GL0: beta-D-gulopyranose(Non-covalent)

GL0.2: 11 residues within 4Å: Chain A: V.8, T.10, M.29, E.31, Y.37 Chain B: V.8, S.9, T.10, M.29, E.31, Y.37 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:V.8, A:T.10, A:T.10, A:E.31, B:T.10, B:E.31 GL0.5: 11 residues within 4Å: Chain C: V.8, T.10, M.29, E.31, Y.37 Chain D: V.8, S.9, T.10, M.29, E.31, Y.37 4 PLIP interactions: 1 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:T.10, C:V.8, C:T.10, C:T.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Levdikov, V.M. et al., Structure of the phosphatase domain of the cell fate determinant SpoIIE from Bacillus subtilis. J.Mol.Biol. (2012)

Release Date

2011-12-07

Peptides

Stage II sporulation protein E: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Stage II sporulation protein E

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