SMTL ID : 3tb2.2 (1 other biounit)

1-Cys peroxidoxin from Plasmodium Yoelli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: K.212, K.213 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.213 SO4.6: 3 residues within 4Å: Chain B: K.211, K.212, K.213 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.213

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 11 residues within 4Å: Chain A: P.40, T.44, P.45, V.46, C.47, E.118, R.129, A.148 Chain B: A.173, I.187, P.188 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.44, A:V.46, A:R.129 GOL.7: 11 residues within 4Å: Chain A: A.173, I.187, P.188 Chain B: P.40, T.44, P.45, V.46, C.47, E.118, R.129, A.148 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:V.46, B:R.129 Water bridges: B:T.44, B:E.118

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: E.207, M.208, P.209 Chain B: Y.88 No protein-ligand interaction detected (PLIP) EDO.4: 6 residues within 4Å: Chain A: N.153, H.155, E.156 Chain B: N.153 Ligands: EDO.11, EDO.12 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.153, A:E.156, B:N.153 Water bridges: A:N.179 EDO.5: 1 residues within 4Å: Chain A: Y.168 No protein-ligand interaction detected (PLIP) EDO.8: 4 residues within 4Å: Chain A: Y.88 Chain B: E.207, M.208, P.209 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.207 EDO.9: 4 residues within 4Å: Chain B: T.122, G.123, L.124 Ligands: EDO.10 No protein-ligand interaction detected (PLIP) EDO.10: 4 residues within 4Å: Chain B: I.121, T.122, G.123 Ligands: EDO.9 No protein-ligand interaction detected (PLIP) EDO.11: 6 residues within 4Å: Chain A: R.159, N.177, N.179 Chain B: N.153, H.155 Ligands: EDO.4 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.179, A:N.179, B:H.155 Water bridges: A:N.177 EDO.12: 6 residues within 4Å: Chain A: N.153, H.155 Chain B: R.159, N.177, N.179 Ligands: EDO.4 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:H.155, B:N.179 Water bridges: A:N.153 EDO.13: 5 residues within 4Å: Chain B: T.167, Y.168, T.169, T.170, P.171 2 PLIP interactions: 2 interactions with chain B Water bridges: B:T.167, B:V.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vedadi, M. et al., Genome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms. Mol.Biochem.Parasitol. (2007)

Release Date

2011-10-19

Peptides

1-Cys peroxiredoxin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

1-Cys peroxiredoxin

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