SMTL ID : 3td7.1

Crysal structure of the mimivirus sulfhydryl oxidase R596

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 25 residues within 4Å: Chain A: T.40, K.41, W.43, G.44, T.45, G.47, W.48, H.52, L.81, C.86, S.89, Y.117, H.120, N.121, V.123, N.124, K.126, L.127, Y.131, L.133, V.138, K.141, M.176, D.177, R.240 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:W.43, A:W.48, A:W.48, A:W.48 Hydrogen bonds: A:T.40, A:W.48, A:S.89, A:Y.117, A:N.124, A:K.126, A:K.126, A:D.177, A:D.177, A:D.177 Water bridges: A:T.40, A:N.121, A:Y.131, A:Y.131, A:K.141, A:K.141 Salt bridges: A:R.240 pi-Stacking: A:H.120, A:H.120 FAD.2: 25 residues within 4Å: Chain B: T.40, K.41, W.43, G.44, T.45, G.47, W.48, H.52, L.81, C.86, S.89, Y.117, H.120, N.121, V.123, N.124, K.126, L.127, Y.131, L.133, V.138, K.141, M.176, D.177, R.240 22 PLIP interactions: 21 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:W.43, B:W.48, B:W.48, B:W.48 Hydrogen bonds: B:T.45, B:W.48, B:S.89, B:Y.117, B:N.124, B:K.126, B:K.126, B:Y.131, B:D.177, B:D.177 Water bridges: B:T.40, B:Y.117, B:K.141, B:K.141, A:Y.174 Salt bridges: B:R.240 pi-Stacking: B:H.120, B:H.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hakim, M. et al., Exploring ORFan domains in giant viruses: structure of mimivirus sulfhydryl oxidase R596. Plos One (2012)

Release Date

2012-09-05

Peptides

FAD-linked sulfhydryl oxidase R596: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

FAD-linked sulfhydryl oxidase R596