SMTL ID : 3tdt.1

COMPLEX OF TETRAHYDRODIPICOLINATE N-SUCCINYLTRANSFERASE WITH 2-AMINO-6-OXOPIMELATE AND COENZYME A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

3 x COA: COENZYME A(Non-covalent)

COA.1: 22 residues within 4Å: Chain A: D.141, S.159, G.160, F.183, G.185, A.186, S.203, M.204, R.217, V.232, V.234, V.253, K.254, K.259, T.260, K.263 Chain C: E.189, V.191, E.192, S.211, R.213, Y.248 18 PLIP interactions: 14 interactions with chain A, 4 interactions with chain C Hydrophobic interactions: A:V.232 Hydrogen bonds: A:S.159, A:A.186, A:S.203, A:S.203, A:M.204, C:E.192, C:S.211, C:R.213 Water bridges: A:R.217, C:S.211 Salt bridges: A:R.217, A:K.254, A:K.254, A:K.259, A:K.259, A:K.263, A:K.263 COA.3: 22 residues within 4Å: Chain A: E.189, V.191, E.192, S.211, R.213, Y.248 Chain B: D.141, S.159, G.160, F.183, G.185, A.186, S.203, M.204, R.217, V.232, V.234, V.253, K.254, K.259, T.260, K.263 18 PLIP interactions: 14 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:V.232 Hydrogen bonds: B:S.159, B:A.186, B:S.203, B:S.203, B:M.204, A:E.192, A:S.211, A:R.213 Water bridges: B:R.217, A:S.211 Salt bridges: B:R.217, B:K.254, B:K.254, B:K.259, B:K.259, B:K.263, B:K.263 COA.5: 22 residues within 4Å: Chain B: E.189, V.191, E.192, S.211, R.213, Y.248 Chain C: D.141, S.159, G.160, F.183, G.185, A.186, S.203, M.204, R.217, V.232, V.234, V.253, K.254, K.259, T.260, K.263 18 PLIP interactions: 14 interactions with chain C, 4 interactions with chain B Hydrophobic interactions: C:V.232 Hydrogen bonds: C:S.159, C:A.186, C:S.203, C:S.203, C:M.204, B:E.192, B:S.211, B:R.213 Water bridges: C:R.217, B:S.211 Salt bridges: C:R.217, C:K.254, C:K.254, C:K.259, C:K.259, C:K.263, C:K.263

3 x 26P: 2-AMINO-6-OXOPIMELIC ACID(Non-covalent)

26P.2: 14 residues within 4Å: Chain A: R.104, V.122, M.124, M.139, D.141, L.270 Chain C: F.67, R.112, N.129, S.148, G.166, V.167, L.168, E.169 12 PLIP interactions: 9 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:R.112, C:N.129, C:S.148, C:V.167, C:L.168, C:E.169, C:E.169, A:D.141 Water bridges: C:G.166, A:T.142 Salt bridges: C:R.112, A:R.104 26P.4: 14 residues within 4Å: Chain A: F.67, R.112, N.129, S.148, G.166, V.167, L.168, E.169 Chain B: R.104, V.122, M.124, M.139, D.141, L.270 12 PLIP interactions: 3 interactions with chain B, 9 interactions with chain A Hydrogen bonds: B:D.141, A:R.112, A:N.129, A:S.148, A:V.167, A:L.168, A:E.169, A:E.169 Water bridges: B:T.142, A:G.166 Salt bridges: B:R.104, A:R.112 26P.6: 14 residues within 4Å: Chain B: F.67, R.112, N.129, S.148, G.166, V.167, L.168, E.169 Chain C: R.104, V.122, M.124, M.139, D.141, L.270 12 PLIP interactions: 3 interactions with chain C, 9 interactions with chain B Hydrogen bonds: C:D.141, B:R.112, B:N.129, B:S.148, B:V.167, B:L.168, B:E.169, B:E.169 Water bridges: C:T.142, B:G.166 Salt bridges: C:R.104, B:R.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Beaman, T.W. et al., The conformational change and active site structure of tetrahydrodipicolinate N-succinyltransferase. Biochemistry (1998)

Release Date

1998-10-14

Peptides

TETRAHYDRODIPICOLINATE N-SUCCINYLTRANSFERASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

TETRAHYDRODIPICOLINATE N-SUCCINYLTRANSFERASE

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