SMTL ID : 3tfh.1

DMSP-dependent demethylase from P. ubique - apo

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: S.126, Y.247 Chain B: H.34, D.127, F.130, E.147 9 PLIP interactions: 2 interactions with chain A, 7 interactions with chain B Hydrogen bonds: A:Y.247, A:Y.247, B:H.34, B:D.127 Water bridges: B:R.13, B:R.13, B:R.13, B:D.127, B:E.147 GOL.2: 9 residues within 4Å: Chain A: R.13, H.34, D.127, I.129, F.130, E.147 Chain B: D.125, S.126, Y.247 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:D.125, A:E.147 Water bridges: A:R.13, A:R.13

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 7 residues within 4Å: Chain A: T.15, L.36, L.37, D.59, V.60, A.61, A.62 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.59, A:A.62 NA.4: 7 residues within 4Å: Chain B: T.15, L.36, L.37, D.59, V.60, A.61, A.62 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.36, B:A.62 Water bridges: B:T.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schuller, D.J. et al., Structures of dimethylsulfoniopropionate-dependent demethylase from the marine organism Pelagabacter ubique. Protein Sci. (2012)

Release Date

2011-12-28

Peptides

GcvT-like Aminomethyltransferase protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GcvT-like Aminomethyltransferase protein

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