SMTL ID : 3tfl.1

LytR-Cps2a-Psr family protein with bound octaprenyl pyrophosphate lipid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: S.70, Y.71, L.72, F.92, I.95, Y.354 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.71, A:L.72 Water bridges: A:T.43, A:T.43, A:Y.354 EDO.3: 6 residues within 4Å: Chain A: D.237, Q.238, D.277, R.280, N.281, K.284 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.238, A:N.281, A:K.284 Water bridges: A:D.237, A:D.237 EDO.4: 3 residues within 4Å: Chain A: Q.291, N.335, Y.336 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.336 EDO.5: 3 residues within 4Å: Chain A: E.320, I.323, N.324 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.324, A:N.324 EDO.6: 6 residues within 4Å: Chain A: H.248, F.249, P.250, V.254, H.255, Q.260 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.248, A:H.255 Water bridges: A:H.255 EDO.7: 6 residues within 4Å: Chain A: Q.341, D.342, K.344, S.370, V.373, V.374 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.342, A:D.342, A:K.344

1 x ZTP: (2Z,6Z,10Z,14Z,18Z,22Z,26Z)-3,7,11,15,19,23,27,31-octamethyldotriaconta-2,6,10,14,18,22,26,30-octaen-1-yl trihydrogen diphosphate(Non-covalent)

ZTP.2: 27 residues within 4Å: Chain A: F.130, I.132, G.136, I.137, D.138, R.148, D.150, V.151, M.155, R.171, N.218, F.219, F.222, V.265, R.266, R.268, R.278, Q.282, I.286, I.289, L.290, L.293, T.294, L.299, L.325, Q.329, Y.336 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:F.130, A:I.132, A:V.151, A:F.219, A:F.219, A:F.222, A:R.266, A:Q.282, A:I.286, A:I.289, A:I.289, A:L.293, A:L.299, A:L.325, A:Q.329 Hydrogen bonds: A:D.138, A:D.150 Water bridges: A:R.278, A:R.278 Salt bridges: A:R.148, A:R.148, A:R.171, A:R.266, A:R.268, A:R.278

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kawai, Y. et al., A widespread family of bacterial cell wall assembly proteins. Embo J. (2011)

Release Date

2011-10-12

Peptides

CPS2A, Integral membrane regulatory protein Wzg: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CPS2A, Integral membrane regulatory protein Wzg

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