SMTL ID : 3tfo.1

Crystal structure of a putative 3-oxoacyl-(acyl-carrier-protein) reductase from Sinorhizobium meliloti

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

homo-tetramer

Ligands

2 x HEZ: HEXANE-1,6-DIOL(Non-covalent)

HEZ.1: 7 residues within 4Å: Chain A: Q.220, T.230, I.233 Chain B: A.217, Q.220, T.230, I.233 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Q.220, B:I.233, A:Q.220 Hydrogen bonds: B:T.230, B:T.230 Water bridges: A:Q.220 HEZ.8: 9 residues within 4Å: Chain C: A.217, Q.220, T.230, I.233 Chain D: A.217, Q.220, V.221, T.230, I.233 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain D Hydrophobic interactions: C:Q.220, C:I.233, D:I.233 Hydrogen bonds: C:T.230, D:T.230

11 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: R.219, Q.220, E.223 Chain B: R.219, Q.220 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Water bridges: B:R.219, A:R.219, A:Q.220 Salt bridges: B:R.219, A:R.219 Hydrogen bonds: A:E.223 SO4.3: 3 residues within 4Å: Chain A: D.4, K.30, R.81 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.4 Water bridges: A:R.81 Salt bridges: A:K.30, A:R.81 SO4.4: 2 residues within 4Å: Chain A: P.225, Q.226 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.226 Water bridges: A:M.1, A:M.1, A:S.227 SO4.5: 4 residues within 4Å: Chain B: F.158, R.161 Chain D: F.158, R.161 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain B Salt bridges: D:R.161, B:R.161 SO4.6: 3 residues within 4Å: Chain B: R.37, Q.38, A.39 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.38, B:A.39 Water bridges: B:R.40 SO4.7: 4 residues within 4Å: Chain B: S.13, A.35, R.36, R.37 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.13, B:S.13, B:R.36, B:R.37 Salt bridges: B:R.36 SO4.9: 5 residues within 4Å: Chain C: G.11, A.12, S.13, A.35, R.36 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.11, C:S.13, C:R.36 Salt bridges: C:R.36 SO4.10: 3 residues within 4Å: Chain C: R.37, Q.38, A.39 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.38, C:A.39 SO4.11: 5 residues within 4Å: Chain C: R.219, Q.220, E.223 Chain D: R.219, Q.220 8 PLIP interactions: 4 interactions with chain D, 4 interactions with chain C Hydrogen bonds: D:Q.220, C:Q.220 Water bridges: D:R.219, D:R.219, C:R.219, C:R.219 Salt bridges: D:R.219, C:R.219 SO4.12: 5 residues within 4Å: Chain D: G.11, A.12, S.13, A.35, R.36 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:G.11, D:S.13, D:S.13, D:R.36 Water bridges: D:G.11 Salt bridges: D:R.36 SO4.13: 3 residues within 4Å: Chain D: R.37, Q.38, A.39 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:Q.38, D:A.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Agarwal, R. et al., Crystal structure of a putative 3-oxoacyl-(acyl-carrier-protein) reductase from Sinorhizobium meliloti. To be Published

Release Date

2011-08-31

Peptides

putative 3-oxoacyl-(acyl-carrier-protein) reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

putative 3-oxoacyl-(acyl-carrier-protein) reductase