SMTL ID : 3tgo.4 (3 other biounits)

Crystal structure of the E. coli BamCD complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-4-4-mer

Ligands

2 x K: POTASSIUM ION(Non-covalent)

K.1: 2 residues within 4Å: Chain A: D.105 Chain C: D.17 No protein-ligand interaction detected (PLIP) K.9: 2 residues within 4Å: Chain E: D.105 Chain G: D.17 No protein-ligand interaction detected (PLIP)

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: G.49, P.50, S.52, Q.53 Ligands: GOL.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.50, A:S.52, A:S.52, A:Q.53 GOL.4: 3 residues within 4Å: Chain A: Q.53 Chain B: K.217 Ligands: GOL.2 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.217, A:Q.53 GOL.7: 3 residues within 4Å: Chain A: K.217 Chain B: Q.53 Chain D: R.75 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D, 1 interactions with chain B Hydrogen bonds: A:K.217, D:R.75, B:Q.53 GOL.8: 7 residues within 4Å: Chain B: M.101, D.105, F.153 Chain D: G.16, D.17, A.19, Y.20 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:D.17, D:A.19, D:Y.20, B:D.105 GOL.10: 5 residues within 4Å: Chain E: G.49, P.50, S.52, Q.53 Ligands: GOL.12 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:P.50, E:S.52, E:S.52, E:Q.53 GOL.12: 3 residues within 4Å: Chain E: Q.53 Chain F: K.217 Ligands: GOL.10 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:Q.53, F:K.217 GOL.15: 3 residues within 4Å: Chain E: K.217 Chain F: Q.53 Chain H: R.75 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain E, 1 interactions with chain H Hydrogen bonds: F:Q.53, E:K.217, H:R.75 GOL.16: 7 residues within 4Å: Chain F: M.101, D.105, F.153 Chain H: G.16, D.17, A.19, Y.20 4 PLIP interactions: 3 interactions with chain H, 1 interactions with chain F Hydrogen bonds: H:D.17, H:A.19, H:Y.20, F:D.105

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain B: R.78, R.81 Chain E: Y.169, R.181 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain A: Y.169, R.181 Chain F: R.78, R.81 Ligand excluded by PLIP

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 1 residues within 4Å: Chain C: K.106 2 PLIP interactions: 2 interactions with chain C Water bridges: C:K.106 Salt bridges: C:K.106 PO4.13: 1 residues within 4Å: Chain G: K.106 2 PLIP interactions: 2 interactions with chain G Water bridges: G:K.106 Salt bridges: G:K.106

2 x NA: SODIUM ION(Non-functional Binders)

NA.6: 2 residues within 4Å: Chain D: N.107, T.109 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:T.109, D:T.109 NA.14: 2 residues within 4Å: Chain H: N.107, T.109 3 PLIP interactions: 3 interactions with chain H Hydrogen bonds: H:N.107, H:T.109 Water bridges: H:T.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, K.H. et al., Crystal structure of the beta-barrel assembly machinery BamCD protein complex. J.Biol.Chem. (2011)

Release Date

2011-09-28

Peptides

UPF0169 lipoprotein yfiO: ABEF
Lipoprotein 34: CDGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E
A

F
B

C
C

D
D

G
C

H
D

UPF0169 lipoprotein yfiO

Lipoprotein 34

Related Entries With Identical Sequence