SMTL ID : 3tgw.1

Crystal structure of subunit B mutant H156A of the A1AO ATP synthase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

9 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: I.185, T.186, N.187, E.188, L.212, A.213, D.214 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.187, A:E.188, A:D.214 Water bridges: A:N.187, A:N.187, A:D.214, A:D.214, A:D.214, A:D.214 GOL.3: 7 residues within 4Å: Chain A: D.125, R.142, P.170, G.171, S.172, G.358, K.359 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.142, A:R.142, A:V.169, A:G.358 Water bridges: A:D.125, A:D.125, A:D.125, A:G.171 GOL.4: 8 residues within 4Å: Chain A: M.34, G.35, D.36, R.40, D.109, A.113, A.114 Ligands: GOL.6 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.35, A:D.36, A:D.36, A:A.113 Water bridges: A:T.38, A:D.109, A:M.115 GOL.5: 5 residues within 4Å: Chain A: K.20, T.21, E.22, P.23, A.49 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.20, A:K.20, A:T.21 GOL.6: 10 residues within 4Å: Chain A: P.14, I.16, M.34, R.40, V.56, N.111, A.113 Chain B: I.387, V.388 Ligands: GOL.4 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.40, A:N.111, A:N.111, B:V.388 Water bridges: A:D.109, B:V.388 GOL.7: 1 residues within 4Å: Chain A: Y.236 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.236 Water bridges: A:E.237 GOL.10: 6 residues within 4Å: Chain B: K.124, D.125, R.142, H.241, I.289, A.293 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.142, B:A.293 Water bridges: B:K.124, B:K.124, B:D.125 GOL.11: 8 residues within 4Å: Chain A: R.349 Chain B: T.137, N.138, S.346, M.351, S.368, D.369, Y.372 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.346, B:S.368, B:S.368, B:D.369, A:R.349, A:R.349 GOL.14: 1 residues within 4Å: Chain B: Y.236 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.236

1 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)

P33.2: 6 residues within 4Å: Chain A: E.158, Y.192, H.333, R.334, K.335, G.336 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.192, A:Y.192 Water bridges: A:H.333

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 5 residues within 4Å: Chain A: Y.277, P.315, D.316 Chain B: E.331, R.334 Ligand excluded by PLIP CL.15: 6 residues within 4Å: Chain A: R.330 Chain B: Y.272, M.276, Y.277, P.315, D.316 Ligand excluded by PLIP

1 x AES: 4-(2-AMINOETHYL)BENZENESULFONYL FLUORIDE(Non-covalent)

AES.9: 8 residues within 4Å: Chain B: K.20, P.23, V.24, Y.26, D.46, S.47, S.48, A.49 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Y.26 Water bridges: B:S.47

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.12: 7 residues within 4Å: Chain A: F.149, I.321, Q.325, V.327 Chain B: F.149, I.321, V.327 1 PLIP interactions: 1 interactions with chain B Water bridges: B:D.316

1 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)

PG0.13: 3 residues within 4Å: Chain B: N.116, Y.236, K.291 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.236, B:K.291

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tadwal, V.S. et al., Structure of subunit A mutants H156A, N157A and N157T of the A1AO ATP synthase. To be Published

Release Date

2012-09-05

Peptides

V-type ATP synthase beta chain: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

V-type ATP synthase beta chain