- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x GAL: beta-D-galactopyranose(Non-covalent)
GAL.6: 14 residues within 4Å:- Chain A: Y.60, I.103, C.104, A.105, E.106, N.164, E.165, E.245, Y.247, W.250, L.251, Y.283, Y.308, Y.310
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:Y.60, A:A.105, A:E.106, A:N.164, A:E.165, A:E.165
- Water bridges: A:Y.247, A:Y.247
GAL.16: 14 residues within 4Å:- Chain B: Y.60, I.103, C.104, A.105, E.106, N.164, E.165, E.245, Y.247, W.250, L.251, Y.283, Y.308, Y.310
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:Y.60, B:Y.60, B:A.105, B:E.106, B:N.164, B:E.165, B:E.165, B:Y.247, B:Y.308, B:Y.310
- Water bridges: B:E.106
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.7: 2 residues within 4Å:- Chain A: R.328, Q.332
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.332, A:Q.332
- Salt bridges: A:R.328
SO4.8: 5 residues within 4Å:- Chain A: S.299, P.300, Y.301, R.434, N.435
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.301, A:N.435
- Water bridges: A:S.299
- Salt bridges: A:R.434
SO4.17: 2 residues within 4Å:- Chain B: R.328, Q.332
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.332
- Salt bridges: B:R.328
SO4.18: 6 residues within 4Å:- Chain B: S.299, P.300, Y.301, R.434, N.435, Y.465
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:Y.301, B:N.435
- Water bridges: B:R.434, B:R.434, B:R.434, B:R.434
- Salt bridges: B:R.434
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.9: 5 residues within 4Å:- Chain A: F.219, G.220, T.221, G.222, S.223
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.220, A:G.222
- Water bridges: A:S.223
EDO.10: 4 residues within 4Å:- Chain A: A.292, Y.293, W.294, Y.390
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.293, A:Y.293
EDO.19: 5 residues within 4Å:- Chain B: F.219, G.220, T.221, G.222, S.223
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:G.220, B:G.222, B:S.223
- Water bridges: B:D.218, B:D.218, B:T.221, B:S.223, B:S.223
EDO.20: 4 residues within 4Å:- Chain B: A.292, Y.293, W.294, Y.390
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Y.293, B:Y.293
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ohto, U. et al., Crystal structure of human beta-galactosidase: structural basis of Gm1 gangliosidosis and morquio B diseases. J.Biol.Chem. (2012)
- Release Date
- 2011-12-07
- Peptides
- Beta-galactosidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x GAL: beta-D-galactopyranose(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ohto, U. et al., Crystal structure of human beta-galactosidase: structural basis of Gm1 gangliosidosis and morquio B diseases. J.Biol.Chem. (2012)
- Release Date
- 2011-12-07
- Peptides
- Beta-galactosidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
D