- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.61 Å
- Oligo State
- hetero-oligomer
- Ligands
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 5 residues within 4Å:- Chain A: S.54, E.328
- Chain B: S.298, G.299
- Ligands: ADP.1
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:E.328
MG.10: 5 residues within 4Å:- Chain A: S.298, G.299
- Chain B: S.54, E.328
- Ligands: ADP.9
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:E.328
- 18 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 2 residues within 4Å:- Chain A: S.74, H.113
Ligand excluded by PLIPSO4.4: 3 residues within 4Å:- Chain A: R.88, I.103, K.116
Ligand excluded by PLIPSO4.5: 3 residues within 4Å:- Chain A: A.130, A.131, S.135
Ligand excluded by PLIPSO4.6: 10 residues within 4Å:- Chain A: F.38, Q.39, S.40, G.41, I.42, T.43, V.354, I.355, V.356, R.370
Ligand excluded by PLIPSO4.7: 2 residues within 4Å:- Chain A: S.183, R.320
Ligand excluded by PLIPSO4.11: 2 residues within 4Å:- Chain B: S.74, H.113
Ligand excluded by PLIPSO4.12: 3 residues within 4Å:- Chain B: R.88, I.103, K.116
Ligand excluded by PLIPSO4.13: 3 residues within 4Å:- Chain B: A.130, A.131, S.135
Ligand excluded by PLIPSO4.14: 10 residues within 4Å:- Chain B: F.38, Q.39, S.40, G.41, I.42, T.43, V.354, I.355, V.356, R.370
Ligand excluded by PLIPSO4.15: 2 residues within 4Å:- Chain B: S.183, R.320
Ligand excluded by PLIPSO4.19: 7 residues within 4Å:- Chain C: M.1, R.122, Q.124, F.168, L.248, K.249
- Ligands: SO4.20
Ligand excluded by PLIPSO4.20: 4 residues within 4Å:- Chain C: R.122, E.247, K.249
- Ligands: SO4.19
Ligand excluded by PLIPSO4.21: 5 residues within 4Å:- Chain C: W.16, T.17, S.18, S.19, K.316
Ligand excluded by PLIPSO4.22: 7 residues within 4Å:- Chain A: R.80
- Chain B: G.289, I.290, E.291
- Chain C: E.160, L.163, K.164
Ligand excluded by PLIPSO4.25: 7 residues within 4Å:- Chain D: M.1, R.122, Q.124, F.168, L.248, K.249
- Ligands: SO4.26
Ligand excluded by PLIPSO4.26: 4 residues within 4Å:- Chain D: R.122, E.247, K.249
- Ligands: SO4.25
Ligand excluded by PLIPSO4.27: 5 residues within 4Å:- Chain D: W.16, T.17, S.18, S.19, K.316
Ligand excluded by PLIPSO4.28: 7 residues within 4Å:- Chain A: G.289, I.290, E.291
- Chain B: R.80
- Chain D: E.160, L.163, K.164
Ligand excluded by PLIP- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.8: 7 residues within 4Å:- Chain A: E.328, F.330, S.331, I.358, T.359, C.360, D.361
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:E.328, A:F.330, A:S.331, A:S.331, A:I.358, A:C.360, A:D.361
PO4.16: 7 residues within 4Å:- Chain B: E.328, F.330, S.331, I.358, T.359, C.360, D.361
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:E.328, B:E.328, B:F.330, B:S.331, B:S.331, B:I.358, B:T.359, B:C.360, B:D.361
- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.17: 7 residues within 4Å:- Chain C: D.8, H.10, D.52, Q.88, H.210, H.212
- Ligands: MN.18
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:D.8, C:H.10, C:D.52, C:H.212
MN.18: 6 residues within 4Å:- Chain C: D.52, N.87, Q.88, H.174, H.210
- Ligands: MN.17
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:D.52, C:H.174, C:H.210
MN.23: 7 residues within 4Å:- Chain D: D.8, H.10, D.52, Q.88, H.210, H.212
- Ligands: MN.24
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:D.8, D:H.10, D:D.52, D:H.212
MN.24: 6 residues within 4Å:- Chain D: D.52, N.87, Q.88, H.174, H.210
- Ligands: MN.23
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:D.52, D:H.174, D:H.210
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mockel, C. et al., ATP driven structural changes of the bacterial Mre11:Rad50 catalytic head complex. Nucleic Acids Res. (2012)
- Release Date
- 2011-10-12
- Peptides
- Probable DNA double-strand break repair Rad50 ATPase: AB
Exonuclease, putative: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
BD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.61 Å
- Oligo State
- hetero-oligomer
- Ligands
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 18 x SO4: SULFATE ION(Non-functional Binders)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mockel, C. et al., ATP driven structural changes of the bacterial Mre11:Rad50 catalytic head complex. Nucleic Acids Res. (2012)
- Release Date
- 2011-10-12
- Peptides
- Probable DNA double-strand break repair Rad50 ATPase: AB
Exonuclease, putative: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
BD
B