- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 10 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
CA.3: 5 residues within 4Å:- Chain A: D.213, G.217, D.243, G.261, N.263
6 PLIP interactions:5 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.213, A:G.217, A:D.243, A:G.261, A:N.263, H2O.2
CA.4: 4 residues within 4Å:- Chain A: D.295, N.297, D.303, N.305
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.295, A:D.303, A:N.305, H2O.2, H2O.3
CA.5: 1 residues within 4Å:- Ligands: CA.24
No protein-ligand interaction detected (PLIP)CA.12: 5 residues within 4Å:- Chain B: D.213, G.217, D.243, G.261, N.263
6 PLIP interactions:5 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.213, B:G.217, B:D.243, B:G.261, B:N.263, H2O.15
CA.13: 4 residues within 4Å:- Chain B: D.295, N.297, D.303, N.305
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.295, B:D.303, B:N.305, H2O.17, H2O.18
CA.22: 5 residues within 4Å:- Chain C: D.213, G.217, D.243, G.261, N.263
6 PLIP interactions:5 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.213, C:G.217, C:D.243, C:G.261, C:N.263, H2O.31
CA.23: 4 residues within 4Å:- Chain C: D.295, N.297, D.303, N.305
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.295, C:D.303, C:N.305, H2O.32, H2O.32
CA.24: 1 residues within 4Å:- Ligands: CA.5
No protein-ligand interaction detected (PLIP)CA.31: 5 residues within 4Å:- Chain D: D.213, G.217, D.243, G.261, N.263
6 PLIP interactions:5 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.213, D:G.217, D:D.243, D:G.261, D:N.263, H2O.45
CA.32: 4 residues within 4Å:- Chain D: D.295, N.297, D.303, N.305
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.295, D:D.303, D:N.305, H2O.47, H2O.47
- 4 x ZMR: ZANAMIVIR(Non-covalent)
ZMR.6: 16 residues within 4Å:- Chain A: R.37, E.38, D.70, R.71, R.75, W.98, I.142, R.144, E.147, S.166, E.196, E.197, R.212, N.214, R.287, Y.321
24 PLIP interactions:24 interactions with chain A- Hydrophobic interactions: A:W.98, A:I.142, A:R.144
- Hydrogen bonds: A:R.71, A:W.98, A:W.98, A:R.144, A:E.197, A:R.212, A:R.212, A:Y.321
- Water bridges: A:R.37, A:R.37, A:D.70, A:R.75, A:R.144, A:E.147, A:E.197
- Salt bridges: A:R.37, A:E.38, A:D.70, A:E.147, A:R.212, A:R.287
ZMR.14: 16 residues within 4Å:- Chain B: R.37, E.38, D.70, R.71, R.75, W.98, I.142, R.144, E.147, S.166, E.196, E.197, R.212, N.214, R.287, Y.321
22 PLIP interactions:22 interactions with chain B- Hydrophobic interactions: B:W.98, B:I.142, B:R.144
- Hydrogen bonds: B:R.71, B:W.98, B:W.98, B:R.144, B:E.197, B:R.212, B:R.212
- Water bridges: B:R.37, B:D.70, B:R.75, B:R.144, B:E.147, B:E.197
- Salt bridges: B:R.37, B:E.38, B:D.70, B:E.147, B:R.212, B:R.287
ZMR.25: 16 residues within 4Å:- Chain C: R.37, E.38, D.70, R.71, R.75, W.98, I.142, R.144, E.147, S.166, E.196, E.197, R.212, N.214, R.287, Y.321
22 PLIP interactions:22 interactions with chain C- Hydrophobic interactions: C:W.98, C:I.142, C:R.144
- Hydrogen bonds: C:R.71, C:W.98, C:W.98, C:R.144, C:E.197, C:R.212, C:R.212
- Water bridges: C:R.37, C:R.37, C:D.70, C:R.75, C:R.144, C:E.197
- Salt bridges: C:R.37, C:E.38, C:D.70, C:E.147, C:R.212, C:R.287
ZMR.33: 16 residues within 4Å:- Chain D: R.37, E.38, D.70, R.71, R.75, W.98, I.142, R.144, E.147, S.166, E.196, E.197, R.212, N.214, R.287, Y.321
22 PLIP interactions:22 interactions with chain D- Hydrophobic interactions: D:W.98, D:I.142, D:R.144
- Hydrogen bonds: D:R.71, D:W.98, D:W.98, D:R.144, D:E.197, D:R.212, D:R.212, D:Y.321
- Water bridges: D:R.37, D:D.70, D:R.75, D:R.144, D:E.197
- Salt bridges: D:R.37, D:E.38, D:D.70, D:E.147, D:R.212, D:R.287
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 8 residues within 4Å:- Chain A: W.318, I.346, R.347, G.348, R.349, P.350, K.351, E.352
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:I.346, A:G.348, A:K.351, A:E.352, A:E.352
GOL.9: 5 residues within 4Å:- Chain A: P.12, V.13, Y.272, W.277, W.294
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.13, A:Y.272
- Water bridges: A:W.294
GOL.18: 6 residues within 4Å:- Chain B: P.12, V.13, S.14, Y.272, W.277, W.294
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:V.13
- Water bridges: B:W.294
GOL.26: 8 residues within 4Å:- Chain C: W.318, I.346, R.347, G.348, R.349, P.350, K.351, E.352
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:I.346, C:G.348, C:K.351, C:E.352
GOL.28: 5 residues within 4Å:- Chain C: P.12, V.13, Y.272, W.277, W.294
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:V.13, C:Y.272
- Water bridges: C:W.294
GOL.37: 6 residues within 4Å:- Chain D: P.12, V.13, S.14, Y.272, W.277, W.294
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:V.13
- Water bridges: D:W.294
- 10 x ACT: ACETATE ION(Non-functional Binders)
ACT.8: 7 residues within 4Å:- Chain A: Y.19, L.46, E.47, C.48
- Chain D: N.128, G.129, I.130
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:E.47
- Hydrogen bonds: A:Y.19, A:C.48
ACT.15: 6 residues within 4Å:- Chain B: I.346, G.348, R.349, P.350, K.351, E.352
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:K.351
- Hydrogen bonds: B:E.352
- Water bridges: B:R.349
ACT.16: 4 residues within 4Å:- Chain B: K.309, Q.310, D.311, G.373
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:D.311
- Hydrogen bonds: B:K.309, B:D.311
- Water bridges: B:G.373
- Salt bridges: B:K.309
ACT.17: 6 residues within 4Å:- Chain A: N.128, G.129
- Chain B: Y.19, L.46, E.47, C.48
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:E.47
- Hydrogen bonds: B:Y.19
ACT.19: 7 residues within 4Å:- Chain B: S.14, G.15, I.308, K.309, Q.310, T.371, V.372
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:I.308
- Hydrogen bonds: B:K.309, B:T.371
- Water bridges: B:G.373, B:G.373
ACT.27: 7 residues within 4Å:- Chain B: N.128, G.129, I.130
- Chain C: Y.19, L.46, E.47, C.48
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:E.47
- Hydrogen bonds: C:Y.19, C:Y.19, C:C.48
ACT.34: 6 residues within 4Å:- Chain D: I.346, G.348, R.349, P.350, K.351, E.352
2 PLIP interactions:2 interactions with chain D- Hydrophobic interactions: D:K.351
- Water bridges: D:R.349
ACT.35: 4 residues within 4Å:- Chain D: K.309, Q.310, D.311, G.373
5 PLIP interactions:5 interactions with chain D- Hydrophobic interactions: D:D.311
- Hydrogen bonds: D:K.309, D:D.311
- Water bridges: D:G.373
- Salt bridges: D:K.309
ACT.36: 6 residues within 4Å:- Chain C: N.128, G.129
- Chain D: Y.19, L.46, E.47, C.48
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:E.47
- Hydrogen bonds: D:Y.19, D:Y.19
ACT.38: 7 residues within 4Å:- Chain D: S.14, G.15, I.308, K.309, Q.310, T.371, V.372
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:I.308
- Hydrogen bonds: D:K.309
- Water bridges: D:G.373, D:G.373
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vavricka, C.J. et al., Structural and functional analysis of laninamivir and its octanoate prodrug reveals group specific mechanisms for influenza NA inhibition. Plos Pathog. (2011)
- Release Date
- 2011-11-16
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 10 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
- 4 x ZMR: ZANAMIVIR(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 10 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vavricka, C.J. et al., Structural and functional analysis of laninamivir and its octanoate prodrug reveals group specific mechanisms for influenza NA inhibition. Plos Pathog. (2011)
- Release Date
- 2011-11-16
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B