SMTL ID : 3ti9.1

Crystal structure of the basic protease BprB from the ovine footrot pathogen, Dichelobacter nodosus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.5, D.49, V.116, N.119, V.121, V.123 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.5, A:D.49, A:V.116, A:V.121, A:V.123 CA.2: 5 residues within 4Å: Chain A: D.59, D.69, D.74, N.76 Ligands: CA.3 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.59, A:D.69, A:N.76, H2O.6, H2O.7 CA.3: 6 residues within 4Å: Chain A: A.67, D.69, D.71, Q.72, D.74 Ligands: CA.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.69, A:D.71, A:Q.72, A:D.74, H2O.6

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 8 residues within 4Å: Chain A: T.195, L.200, N.222, V.223, L.224, P.303, S.304, S.307 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.222, A:V.223, A:P.303, A:S.307 Water bridges: A:N.222, A:D.308

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain A: H.159, D.161, G.162 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wong, W. et al., S1 Pocket of a Bacterially Derived Subtilisin-like Protease Underpins Effective Tissue Destruction. J.Biol.Chem. (2011)

Release Date

2011-10-19

Peptides

Serine protease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine protease