SMTL ID : 3tj2.1 (1 other biounit)

Structure of a novel submicromolar MDM2 inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x TJ2: 3-{(1S)-2-(tert-butylamino)-1-[(4-chlorobenzyl)(formyl)amino]-2-oxoethyl}-6-chloro-1H-indole-2-carboxylic acid(Non-covalent)

TJ2.1: 13 residues within 4Å: Chain A: L.38, F.39, G.42, I.45, M.46, Y.51, V.59, F.70, F.75, V.77, H.80, I.83, Y.84 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.38, A:I.45, A:Y.51, A:Y.51, A:V.59, A:F.75, A:V.77, A:I.83 Hydrogen bonds: A:L.38, A:G.42 Water bridges: A:G.42 pi-Stacking: A:H.80

2 x K: POTASSIUM ION(Non-covalent)

K.2: 1 residues within 4Å: Chain A: T.31 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.31, H2O.2 K.3: 3 residues within 4Å: Chain A: K.15, P.16, L.17 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wolf, S. et al., Ugi Multicomponent Reaction Derived p53-Mdm2 Antagonists. To be published

Release Date

2012-09-12

Peptides

E3 ubiquitin-protein ligase Mdm2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase Mdm2

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