SMTL ID : 3tje.1

Crystal structure of Fas receptor extracellular domain in complex with Fab E09

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

hetero-1-1-1-mer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: Q.38, K.46, L.48, G.58, V.59, S.60, R.62, F.63 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.46, A:S.60 Water bridges: A:Q.38, A:Q.38 EDO.2: 4 residues within 4Å: Chain A: F.27, R.31, D.94, T.95 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.31, A:R.31 EDO.3: 9 residues within 4Å: Chain A: E.164 Chain B: S.42, P.43, A.94, A.95, T.97, L.189, Q.190, S.191 No protein-ligand interaction detected (PLIP) EDO.4: 10 residues within 4Å: Chain A: P.8, D.86, Y.88, G.103, G.104, T.105, K.106 Chain B: G.44, K.45, G.46 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.8, A:Y.88, A:K.106 EDO.6: 9 residues within 4Å: Chain B: R.40, Q.41, S.42, K.45, G.46, L.47, E.48, T.97, A.98 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.42, B:G.46 Water bridges: B:T.97

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain A: P.33, N.52, K.67 Chain C: K.78 Ligand excluded by PLIP

2 x CD: CADMIUM ION(Non-covalent)

CD.7: 2 residues within 4Å: Chain C: D.92, H.95 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.92 CD.8: 2 residues within 4Å: Chain C: H.126, D.128 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.126, C:D.128, C:D.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chodorge, M. et al., A series of Fas receptor agonist antibodies that demonstrate an inverse correlation between affinity and potency. Cell Death Differ. (2012)

Release Date

2012-05-09

Peptides

Fab E09, light chain: A
Fab E09, heavy chain: B
Tumor necrosis factor receptor superfamily member 6: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
F

Fab E09, light chain

Fab E09, heavy chain

Tumor necrosis factor receptor superfamily member 6

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