SMTL ID : 3tjh.1

42F3-p3A1/H2-Ld complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x SER- PRO- LEU- ASP- SER- LEU- TRP- TRP- ILE: p3A1(Non-covalent)

SER-PRO-LEU-ASP-SER-LEU-TRP-TRP-ILE.1: 38 residues within 4Å: Chain A: M.6, Y.8, Y.46, R.63, I.64, V.67, Q.71, W.74, V.77, N.78, T.81, L.82, Y.85, R.98, Y.100, Y.124, T.144, K.147, W.148, A.151, A.153, Y.156, Y.157, Y.160, W.168, Y.172 Chain B: Y.40, Y.59, K.104, G.105, T.106, G.107 Chain C: N.33, Y.34, S.97, D.98, A.99, P.100 46 PLIP interactions: 8 interactions with chain C, 34 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: C:N.33, C:Y.34, C:Y.34, C:A.99, C:P.100, A:Y.46, A:I.64, A:V.77, A:N.78, A:L.82, A:Y.85, A:Y.100, A:T.144, A:W.148, A:A.151, A:A.153, A:Y.156, A:Y.156, A:Y.157, A:Y.160, A:Y.160, A:Y.160, B:Y.40, B:Y.59 Hydrogen bonds: C:N.33, C:D.98, A:Y.8, A:R.63, A:R.63, A:V.67, A:Q.71, A:Q.71, A:N.78, A:R.98, A:R.98, A:Y.100, A:Y.100, A:K.147, A:Y.157, A:Y.172, A:Y.172 Water bridges: C:Y.104, A:Y.157, B:Y.40 Salt bridges: A:K.147, B:K.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adams, J.J. et al., T cell receptor signaling is limited by docking geometry to peptide-major histocompatibility complex. Immunity (2011)

Release Date

2011-12-07

Peptides

H2-Ld SBM2: A
42F3 alpha: B
42F3 beta: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

H2-Ld SBM2

42F3 alpha

42F3 beta

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