SMTL ID : 3tjq.1

N-domain of HtrA1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x PT: PLATINUM (II) ION(Non-functional Binders)(Non-covalent)

PT.1: 3 residues within 4Å: Ligands: CL.2, CL.3, CL.4 No protein-ligand interaction detected (PLIP) PT.5: 4 residues within 4Å: Chain A: R.119 Ligands: CL.6, CL.7, CL.10 No protein-ligand interaction detected (PLIP)

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Ligands: PT.1, CL.3, CL.4 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Ligands: PT.1, CL.2 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: V.72 Ligands: PT.1, CL.2 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain A: H.34, R.119 Ligands: PT.5, CL.7 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain A: R.115, R.119 Ligands: PT.5, CL.6 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain A: C.35, G.38, R.39, R.119 Ligands: PT.5 Ligand excluded by PLIP

4 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.8: 5 residues within 4Å: Chain A: G.68, S.96, L.111, C.112, R.115 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.115 SCN.11: 1 residues within 4Å: Chain A: Q.61 No protein-ligand interaction detected (PLIP) SCN.12: 4 residues within 4Å: Chain A: P.53, E.54, A.116, R.119 No protein-ligand interaction detected (PLIP) SCN.13: 1 residues within 4Å: Chain A: C.71 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 4 residues within 4Å: Chain A: E.36, C.50, G.51, A.52 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.36, A:E.36, A:C.50 Water bridges: A:E.36, A:A.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eigenbrot, C. et al., Structural and Functional Analysis of HtrA1 and Its Subdomains. Structure (2012)

Release Date

2012-05-16

Peptides

Serine protease HTRA1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine protease HTRA1