SMTL ID : 3tju.1

Crystal structure of human granzyme H with an inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x ACE- PRO- THR- SER- TYW- 0QE: Ac-PTSY-CMK inhibitor(Non-covalent)

ACE-PRO-THR-SER-TYW-0QE.1: 14 residues within 4Å: Chain A: H.44, F.85, N.159, G.177, F.178, K.179, G.180, S.182, S.197, Y.198, G.199, N.200, K.201, G.203 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.180, A:D.181, A:S.182, A:S.197, A:G.199, A:G.199, A:N.200, A:N.200

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain A: K.83 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.81 Salt bridges: A:K.83 SO4.3: 1 residues within 4Å: Chain A: K.201 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.201 SO4.4: 4 residues within 4Å: Chain A: Q.19, R.26, R.28, K.60 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.19 Salt bridges: A:R.26, A:R.28, A:K.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, L. et al., Structural insights into the substrate specificity of human granzyme H: the functional roles of a novel RKR motif. J.Immunol. (2012)

Release Date

2011-12-28

Peptides

Granzyme H: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Granzyme H

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