SMTL ID : 3tlc.1

Microcin C7 self immunity protein MccF in complex with Microcin C7 antibiotic

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-dimer

Ligands

2 x 7MD: 5'-O-[(R)-(3-aminopropoxy)(L-alpha-aspartylamino)phosphoryl]adenosine(Non-covalent)

7MD.1: 16 residues within 4Å: Chain A: I.117, G.118, G.119, Y.144, A.145, D.146, P.170, S.210, W.213, N.245, N.247, T.248, R.273, K.274, E.304, H.338 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:G.118, A:G.119, A:D.146, A:N.247, A:R.273, A:E.304, A:H.338 Water bridges: A:N.245 Salt bridges: A:K.274 pi-Stacking: A:W.213, A:W.213, A:W.213, A:W.213 7MD.3: 16 residues within 4Å: Chain B: I.117, G.118, G.119, Y.144, A.145, D.146, P.170, S.210, W.213, N.245, N.247, T.248, R.273, K.274, E.304, H.338 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:G.118, B:G.119, B:D.146, B:N.247, B:T.248, B:R.273, B:E.304, B:H.338 Water bridges: B:Y.144, B:N.245, B:S.272, B:K.274, B:E.304 Salt bridges: B:K.274 pi-Stacking: B:W.213, B:W.213, B:W.213

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: I.269, E.270, D.271, G.301, H.303, P.315 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.271 EDO.4: 6 residues within 4Å: Chain B: I.269, E.270, D.271, G.301, H.303, P.315 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Agarwal, V. et al., Structure and function of a serine carboxypeptidase adapted for degradation of the protein synthesis antibiotic microcin C7. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-02-29

Peptides

MccF: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MccF

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