SMTL ID : 3tlo.1

Crystal structure of HCoV-NL63 3C-like protease

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: K.5, M.6, Q.8, S.110, F.111, N.112, G.126, N.150, E.292 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.5, A:S.110, A:N.150, A:N.150 Water bridges: A:M.6, A:S.110 GOL.3: 5 residues within 4Å: Chain A: D.202, S.243, C.247, Y.248, L.302 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.243, A:S.243 Water bridges: A:D.202 GOL.4: 6 residues within 4Å: Chain A: S.122 Chain B: M.6, Q.8, Q.296 Ligands: GOL.5, GOL.6 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.296 Water bridges: B:K.4, B:M.6, B:Q.8 GOL.5: 7 residues within 4Å: Chain A: Y.117, S.122, I.140 Chain B: K.295, Q.296, G.299 Ligands: GOL.4 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.295, B:Q.296, A:Y.117 GOL.6: 9 residues within 4Å: Chain B: M.6, Q.8, S.110, F.111, N.112, G.126, N.150, E.292 Ligands: GOL.4 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:F.111, B:N.150 Water bridges: B:K.5

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 6 residues within 4Å: Chain A: L.32, G.33, S.93, N.94, T.97, H.100 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.97 Water bridges: A:D.34, A:D.34, A:D.34, A:T.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chuck, C.P. et al., Crystal structure of human coronavirus NL63 3C-like protease. To be Published

Release Date

2012-09-05

Peptides

3C-like proteinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3C-like proteinase

Related Entries With Identical Sequence