SMTL ID : 3tly.1

Microcin C7 self immunity protein MccF active site mutant S118A/N220A/K247A in the apo state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: G.119, D.146, N.245, T.248, H.338 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.146, A:T.248 Water bridges: A:S.272, A:S.272, A:S.272 EDO.2: 7 residues within 4Å: Chain A: I.269, E.270, D.271, V.279, G.301, H.303, P.315 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.271 EDO.3: 5 residues within 4Å: Chain A: A.53, A.55, T.58, I.117, W.213 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.58, A:T.58 EDO.4: 4 residues within 4Å: Chain A: Y.131, D.132, I.135, K.157 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.132 Water bridges: A:D.132 EDO.5: 5 residues within 4Å: Chain B: G.119, D.146, N.245, T.248, H.338 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:D.146, B:T.248 Water bridges: B:D.146, B:S.272, B:S.272, B:S.272 EDO.6: 6 residues within 4Å: Chain B: I.269, E.270, D.271, G.301, H.303, P.315 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.271, B:H.303

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Agarwal, V. et al., Structure and function of a serine carboxypeptidase adapted for degradation of the protein synthesis antibiotic microcin C7. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-02-29

Peptides

MccF: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MccF