SMTL ID : 3tme.1

Crystal structure of Staphylococcal nuclease variant Delta+NVIAGLA V23E at cryogenic temperature

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x THP: THYMIDINE-3',5'-DIPHOSPHATE(Non-covalent)

THP.1: 10 residues within 4Å: Chain A: R.35, L.36, L.37, D.77, K.78, Y.79, R.81, L.83, Y.107, Y.109 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:R.35, A:L.83, A:Y.107, A:Y.107 Hydrogen bonds: A:R.81 Water bridges: A:R.35, A:D.40, A:Y.79, A:Y.79, A:Y.107 Salt bridges: A:R.35, A:K.78, A:R.81

1 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.2: 6 residues within 4Å: Chain A: L.14, E.23, K.24, L.25, F.34, T.56 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.14, A:L.25, A:T.56 Hydrogen bonds: A:F.34 Water bridges: A:F.34, A:L.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Robinson, A.C. et al., Crystal structure of Staphylococcal nuclease variant Delta+NVIAGLA V23E at cryogenic temperature. To be Published

Release Date

2011-09-14

Peptides

Thermonuclease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thermonuclease