- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x A5P: ARABINOSE-5-PHOSPHATE(Non-covalent)
- 10 x NO3: NITRATE ION(Non-functional Binders)
NO3.2: 11 residues within 4Å:- Chain A: K.57, S.59, K.62, D.97, Q.115, K.140, H.204, F.239, E.241
- Ligands: A5P.1, NO3.3
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:K.57, A:S.59, A:K.62, A:K.62, A:Q.115, A:K.140, A:K.140
NO3.3: 6 residues within 4Å:- Chain A: P.117, A.118, K.140, R.170
- Ligands: A5P.1, NO3.2
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:A.118, A:K.140, A:R.170, A:R.170
- Water bridges: A:N.64, A:N.64, A:N.64, A:F.119, A:Q.207
NO3.4: 5 residues within 4Å:- Chain A: N.17, F.186, R.187, V.198, G.234
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.17
NO3.6: 9 residues within 4Å:- Chain A: F.174
- Chain B: S.173, F.174, G.175
- Chain C: F.174, G.175
- Chain D: S.173, F.174, G.175
5 PLIP interactions:2 interactions with chain B, 1 interactions with chain C, 1 interactions with chain D, 1 interactions with chain A- Hydrogen bonds: B:S.173, B:G.175, C:G.175, D:G.175
- Water bridges: A:G.175
NO3.7: 10 residues within 4Å:- Chain B: K.57, S.59, K.62, D.97, Q.115, K.140, H.204, F.239, E.241
- Ligands: EDO.8
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:K.57, B:S.59, B:K.62, B:K.62, B:Q.115, B:K.140, B:K.140, B:E.241
NO3.11: 11 residues within 4Å:- Chain C: K.57, S.59, K.62, D.97, Q.115, K.140, H.204, F.239, E.241
- Ligands: A5P.10, NO3.12
9 PLIP interactions:9 interactions with chain C- Hydrogen bonds: C:K.57, C:S.59, C:K.62, C:K.62, C:Q.115, C:K.140, C:K.140
- Water bridges: C:D.97, C:D.97
NO3.12: 7 residues within 4Å:- Chain C: P.117, A.118, K.140, R.170
- Ligands: A5P.10, NO3.11, EDO.15
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:A.118, C:R.170, C:R.170
- Water bridges: C:N.64, C:N.64, C:N.64, C:F.119
NO3.13: 6 residues within 4Å:- Chain C: N.17, F.186, R.187, A.190, V.198, G.234
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:F.186
- Water bridges: C:R.187
NO3.14: 6 residues within 4Å:- Chain C: D.177, N.178, L.179, Q.207, C.208
- Ligands: EDO.15
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain A- Water bridges: C:S.173, C:D.177, A:F.144
NO3.16: 10 residues within 4Å:- Chain D: K.57, S.59, K.62, D.97, Q.115, K.140, H.204, F.239, E.241
- Ligands: EDO.17
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:K.57, D:K.62, D:Q.115, D:K.140
- Water bridges: D:D.97, D:D.97
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 6 residues within 4Å:- Chain A: D.177, N.178, L.179, Q.207, C.208
- Chain C: F.144
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain A- Hydrogen bonds: C:F.144, A:D.177
- Water bridges: C:S.146, A:N.178
EDO.8: 5 residues within 4Å:- Chain B: P.117, A.118, K.140, R.170
- Ligands: NO3.7
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:A.118, B:R.170, B:R.170
- Water bridges: B:F.119
EDO.9: 5 residues within 4Å:- Chain B: N.17, F.186, R.187, V.198, G.234
No protein-ligand interaction detected (PLIP)EDO.15: 8 residues within 4Å:- Chain A: R.122
- Chain C: Q.143, R.170, Q.207, R.209
- Ligands: A5P.10, NO3.12, NO3.14
6 PLIP interactions:4 interactions with chain C, 2 interactions with chain A- Hydrogen bonds: C:R.170, C:Q.207, C:R.209, A:R.122, A:R.122
- Water bridges: C:Q.143
EDO.17: 5 residues within 4Å:- Chain D: P.117, A.118, K.140, R.170
- Ligands: NO3.16
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:A.118, D:R.170, D:R.170
- Water bridges: D:F.119
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Baugh, L. et al., Combining functional and structural genomics to sample the essential Burkholderia structome. Plos One (2013)
- Release Date
- 2011-09-21
- Peptides
- 2-dehydro-3-deoxyphosphooctonate aldolase 2: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x A5P: ARABINOSE-5-PHOSPHATE(Non-covalent)
- 10 x NO3: NITRATE ION(Non-functional Binders)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Baugh, L. et al., Combining functional and structural genomics to sample the essential Burkholderia structome. Plos One (2013)
- Release Date
- 2011-09-21
- Peptides
- 2-dehydro-3-deoxyphosphooctonate aldolase 2: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D