SMTL ID : 3tox.1 (2 other biounits)

Crystal structure of a short chain dehydrogenase in complex with NAD(P) from Sinorhizobium meliloti 1021

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 29 residues within 4Å: Chain A: G.15, A.16, S.17, S.18, G.19, I.20, A.39, R.40, N.41, G.64, D.65, V.66, N.92, A.93, G.94, T.116, T.143, S.144, S.145, Y.159, K.163, P.189, G.190, G.191, T.192, T.194, P.195, A.196, N.197 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:P.189 Hydrogen bonds: A:G.15, A:S.17, A:S.17, A:S.18, A:S.18, A:S.18, A:I.20, A:R.40, A:N.41, A:D.65, A:V.66, A:N.92, A:G.94, A:K.163, A:T.192, A:T.192, A:A.196, A:N.197 Water bridges: A:G.21, A:R.40, A:R.40, A:G.67, A:N.92, A:T.116 Salt bridges: A:R.40 pi-Cation interactions: A:R.40 NAP.2: 29 residues within 4Å: Chain B: G.15, A.16, S.17, S.18, G.19, I.20, A.39, R.40, N.41, G.64, D.65, V.66, N.92, A.93, G.94, T.116, T.143, S.144, S.145, Y.159, K.163, P.189, G.190, G.191, T.192, T.194, P.195, A.196, N.197 24 PLIP interactions: 24 interactions with chain B Hydrogen bonds: B:G.15, B:S.17, B:S.17, B:S.17, B:S.18, B:S.18, B:I.20, B:R.40, B:N.41, B:D.65, B:V.66, B:N.92, B:G.94, B:Y.159, B:K.163, B:T.192, B:T.192, B:T.192, B:A.196, B:N.197 Water bridges: B:G.67, B:N.92, B:N.92 Salt bridges: B:R.40 NAP.3: 29 residues within 4Å: Chain C: G.15, A.16, S.17, S.18, G.19, I.20, A.39, R.40, N.41, G.64, D.65, V.66, N.92, A.93, G.94, T.116, T.143, S.144, S.145, Y.159, K.163, P.189, G.190, G.191, T.192, T.194, P.195, A.196, N.197 29 PLIP interactions: 29 interactions with chain C Hydrophobic interactions: C:P.189 Hydrogen bonds: C:G.15, C:S.17, C:S.17, C:S.18, C:S.18, C:S.18, C:I.20, C:R.40, C:N.41, C:D.65, C:V.66, C:N.92, C:G.94, C:Y.159, C:K.163, C:T.192, C:T.192, C:T.194, C:A.196, C:N.197 Water bridges: C:G.21, C:R.40, C:R.40, C:R.40, C:G.67, C:N.92 Salt bridges: C:R.40 pi-Cation interactions: C:R.40 NAP.4: 29 residues within 4Å: Chain D: G.15, A.16, S.17, S.18, G.19, I.20, A.39, R.40, N.41, G.64, D.65, V.66, N.92, A.93, G.94, T.116, T.143, S.144, S.145, Y.159, K.163, P.189, G.190, G.191, T.192, T.194, P.195, A.196, N.197 23 PLIP interactions: 23 interactions with chain D Hydrogen bonds: D:G.15, D:S.17, D:S.17, D:S.17, D:S.18, D:S.18, D:I.20, D:R.40, D:N.41, D:D.65, D:V.66, D:N.92, D:G.94, D:K.163, D:T.192, D:T.192, D:T.194, D:A.196, D:N.197 Water bridges: D:G.67, D:N.92, D:N.92 Salt bridges: D:R.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Agarwal, R. et al., Crystal structure of a short chain dehydrogenase in complex with NAD(P) from Sinorhizobium meliloti 1021. To be Published

Release Date

2011-09-21

Peptides

Short chain dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Short chain dehydrogenase

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