SMTL ID : 3tp5.1

Crystal structure of Staphylococcal nuclease variant Delta+NVIAGLA V23E/L36E at cryogenic temperature

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x THP: THYMIDINE-3',5'-DIPHOSPHATE(Non-covalent)

THP.1: 10 residues within 4Å: Chain A: R.35, E.36, L.37, D.77, K.78, Y.79, R.81, L.83, Y.107, Y.109 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:R.35, A:Y.107, A:Y.107 Hydrogen bonds: A:D.40, A:E.43, A:R.81 Water bridges: A:K.78, A:Y.107 Salt bridges: A:R.35, A:K.78, A:R.81

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 5 residues within 4Å: Chain A: T.22, F.34, E.36, T.56, I.86 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.34, A:T.56, A:I.86 Hydrogen bonds: A:E.36, A:E.36 Water bridges: A:F.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Robinson, A.C. et al., Crystal structure of Staphylococcal nuclease variant Delta+NVIAGLA V23E/L36E at cryogenic temperature. To be Published

Release Date

2011-09-21

Peptides

Thermonuclease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thermonuclease