- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x DUP: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-functional Binders)
- 3 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.3: 14 residues within 4Å:- Chain A: Q.88, V.89, Y.90, P.91
- Chain B: Q.88, V.89, Y.90, P.91
- Chain C: Q.88, V.89, Y.90, P.91
- Ligands: TRS.6, TRS.9
11 PLIP interactions:4 interactions with chain B, 3 interactions with chain A, 4 interactions with chain C- Hydrogen bonds: B:Q.88, A:Q.88, A:V.89, C:Q.88
- Water bridges: B:V.89, B:V.89, B:V.89, A:V.89, C:V.89, C:V.89, C:P.91
TRS.6: 14 residues within 4Å:- Chain A: Q.88, V.89, Y.90, P.91
- Chain B: Q.88, V.89, Y.90, P.91
- Chain C: Q.88, V.89, Y.90, P.91
- Ligands: TRS.3, TRS.9
11 PLIP interactions:3 interactions with chain B, 4 interactions with chain A, 4 interactions with chain C- Hydrogen bonds: B:Q.88, B:V.89, A:Q.88, C:Q.88
- Water bridges: B:V.89, A:V.89, A:V.89, A:P.91, C:V.89, C:V.89, C:V.89
TRS.9: 14 residues within 4Å:- Chain A: Q.88, V.89, Y.90, P.91
- Chain B: Q.88, V.89, Y.90, P.91
- Chain C: Q.88, V.89, Y.90, P.91
- Ligands: TRS.3, TRS.6
11 PLIP interactions:4 interactions with chain B, 4 interactions with chain A, 3 interactions with chain C- Hydrogen bonds: B:Q.88, B:V.89, A:Q.88, C:Q.88, C:V.89
- Water bridges: B:V.89, B:P.91, A:V.89, A:V.89, A:V.89, C:V.89
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Barabas, O. et al., Structural Snapshots of Enzyme-Catalysed Phosphate Ester Hydrolysis Directly Visualize In-line Attack and Inversion. to be published
- Release Date
- 2011-10-05
- Peptides
- DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDO HYDROLASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x DUP: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-functional Binders)
- 3 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Barabas, O. et al., Structural Snapshots of Enzyme-Catalysed Phosphate Ester Hydrolysis Directly Visualize In-line Attack and Inversion. to be published
- Release Date
- 2011-10-05
- Peptides
- DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDO HYDROLASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A