- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)
- 3 x DUP: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE(Non-covalent)
DUP.2: 16 residues within 4Å:- Chain A: I.76, G.92, V.93, I.94, D.95, Y.98, E.101, I.102, K.103, M.105
- Chain C: R.79, S.80, S.81, Q.123
- Ligands: UMP.1, MG.3
15 PLIP interactions:7 interactions with chain A, 8 interactions with chain C- Hydrophobic interactions: A:I.94, A:Y.98
- Hydrogen bonds: A:V.93, A:D.95, A:K.103, A:K.103, C:R.79, C:S.80, C:S.80, C:S.80, C:S.81, C:Q.123
- Water bridges: A:M.105, C:R.79
- Salt bridges: C:R.79
DUP.5: 16 residues within 4Å:- Chain A: R.79, S.80, S.81, Q.123
- Chain B: I.76, G.92, V.93, I.94, D.95, Y.98, E.101, I.102, K.103, M.105
- Ligands: UMP.4, MG.6
15 PLIP interactions:7 interactions with chain B, 8 interactions with chain A- Hydrophobic interactions: B:I.94, B:Y.98
- Hydrogen bonds: B:V.93, B:D.95, B:K.103, B:K.103, A:R.79, A:S.80, A:S.80, A:S.80, A:S.81, A:Q.123
- Water bridges: B:M.105, A:R.79
- Salt bridges: A:R.79
DUP.8: 16 residues within 4Å:- Chain B: R.79, S.80, S.81, Q.123
- Chain C: I.76, G.92, V.93, I.94, D.95, Y.98, E.101, I.102, K.103, M.105
- Ligands: UMP.7, MG.9
15 PLIP interactions:7 interactions with chain C, 8 interactions with chain B- Hydrophobic interactions: C:I.94, C:Y.98
- Hydrogen bonds: C:V.93, C:D.95, C:K.103, C:K.103, B:R.79, B:S.80, B:S.80, B:S.80, B:S.81, B:Q.123
- Water bridges: C:M.105, B:R.79
- Salt bridges: B:R.79
- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 3 residues within 4Å:- Chain C: R.79
- Ligands: UMP.1, DUP.2
No protein-ligand interaction detected (PLIP)MG.6: 3 residues within 4Å:- Chain A: R.79
- Ligands: UMP.4, DUP.5
No protein-ligand interaction detected (PLIP)MG.9: 3 residues within 4Å:- Chain B: R.79
- Ligands: UMP.7, DUP.8
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Barabas, O. et al., Structural Snapshots of Enzyme-Catalysed Phosphate Ester Hydrolysis Directly Visualize In-line Attack and Inversion. to be published
- Release Date
- 2011-10-12
- Peptides
- DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDO HYDROLASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)
- 3 x DUP: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Barabas, O. et al., Structural Snapshots of Enzyme-Catalysed Phosphate Ester Hydrolysis Directly Visualize In-line Attack and Inversion. to be published
- Release Date
- 2011-10-12
- Peptides
- DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDO HYDROLASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A