SMTL ID : 3tqz.1 (1 other biounit)

Structure of a deoxyuridine 5'-triphosphate nucleotidohydrolase (dut) from Coxiella burnetii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-trimer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.74, S.75, G.76, L.77, R.119 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.75, A:G.76, A:L.77 Water bridges: A:R.74, A:R.74 Salt bridges: A:R.74, A:R.119 SO4.2: 4 residues within 4Å: Chain A: R.74, Y.112, D.118 Ligands: SO4.3 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.112 Water bridges: A:R.74, A:D.118, A:D.118, A:D.118, A:D.118, A:R.119 Salt bridges: A:R.74 SO4.3: 3 residues within 4Å: Chain A: R.37, R.119 Ligands: SO4.2 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.119 Salt bridges: A:R.37, A:R.119 SO4.4: 5 residues within 4Å: Chain B: R.74, S.75, G.76, L.77, R.119 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.75, B:G.76, B:L.77 Water bridges: B:R.74, B:R.74 Salt bridges: B:R.74, B:R.119 SO4.5: 4 residues within 4Å: Chain B: R.74, Y.112, D.118 Ligands: SO4.6 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:Y.112 Water bridges: B:R.74, B:D.118, B:D.118, B:D.118, B:D.118, B:R.119 Salt bridges: B:R.74 SO4.6: 3 residues within 4Å: Chain B: R.37, R.119 Ligands: SO4.5 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.119 Salt bridges: B:R.37, B:R.119 SO4.7: 5 residues within 4Å: Chain C: R.74, S.75, G.76, L.77, R.119 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:S.75, C:G.76, C:L.77 Water bridges: C:R.74, C:R.74 Salt bridges: C:R.74, C:R.119 SO4.8: 4 residues within 4Å: Chain C: R.74, Y.112, D.118 Ligands: SO4.9 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:Y.112 Water bridges: C:R.74, C:D.118, C:D.118, C:D.118, C:D.118, C:R.119 Salt bridges: C:R.74 SO4.9: 3 residues within 4Å: Chain C: R.37, R.119 Ligands: SO4.8 3 PLIP interactions: 3 interactions with chain C Water bridges: C:R.119 Salt bridges: C:R.37, C:R.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Franklin, M.C. et al., Structural genomics for drug design against the pathogen Coxiella burnetii. Proteins (2015)

Release Date

2011-09-21

Peptides

Deoxyuridine 5'-triphosphate nucleotidohydrolase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Deoxyuridine 5'-triphosphate nucleotidohydrolase

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