SMTL ID : 3tr5.1

Structure of a peptide chain release factor 3 (prfC) from Coxiella burnetii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

homo-tetramer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: Q.373, Q.417, E.420 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.420, H2O.8 CA.3: 3 residues within 4Å: Chain B: Q.373, Q.417, E.420 No protein-ligand interaction detected (PLIP) CA.5: 3 residues within 4Å: Chain C: Q.373, Q.417, E.420 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.420, H2O.30, H2O.33, H2O.34 CA.7: 3 residues within 4Å: Chain D: Q.373, Q.417, E.420 2 PLIP interactions: 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.420, H2O.43

4 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 15 residues within 4Å: Chain A: P.22, D.23, A.24, G.25, K.26, T.27, T.28, H.92, N.142, K.143, D.145, R.146, S.257, A.258, I.259 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:D.23, A:A.24, A:G.25, A:K.26, A:T.27, A:T.27, A:T.27, A:T.28, A:T.28, A:N.142, A:K.143, A:K.143, A:S.257, A:A.258, A:I.259 Water bridges: A:K.26, A:K.26, A:T.28 Salt bridges: A:K.26, A:H.92, A:D.145 GDP.4: 15 residues within 4Å: Chain B: P.22, D.23, A.24, G.25, K.26, T.27, T.28, H.92, N.142, K.143, D.145, R.146, S.257, A.258, I.259 21 PLIP interactions: 21 interactions with chain B Hydrogen bonds: B:D.23, B:D.23, B:A.24, B:G.25, B:K.26, B:T.27, B:T.27, B:T.27, B:T.28, B:T.28, B:N.142, B:K.143, B:K.143, B:S.257, B:A.258, B:I.259 Water bridges: B:K.26, B:K.26 Salt bridges: B:H.92, B:D.145 pi-Cation interactions: B:K.143 GDP.6: 16 residues within 4Å: Chain C: H.21, P.22, D.23, A.24, G.25, K.26, T.27, T.28, H.92, N.142, K.143, D.145, R.146, S.257, A.258, I.259 18 PLIP interactions: 18 interactions with chain C Hydrogen bonds: C:D.23, C:A.24, C:G.25, C:K.26, C:T.27, C:T.27, C:T.27, C:T.28, C:T.28, C:N.142, C:K.143, C:K.143, C:R.146, C:S.257, C:I.259 Water bridges: C:R.146 Salt bridges: C:H.92, C:D.145 GDP.8: 15 residues within 4Å: Chain D: P.22, D.23, A.24, G.25, K.26, T.27, T.28, H.92, N.142, K.143, D.145, R.146, S.257, A.258, I.259 20 PLIP interactions: 20 interactions with chain D Hydrogen bonds: D:D.23, D:A.24, D:G.25, D:K.26, D:T.27, D:T.27, D:T.27, D:T.28, D:T.28, D:N.142, D:K.143, D:K.143, D:S.257, D:A.258, D:I.259 Water bridges: D:K.26, D:T.27, D:K.47 Salt bridges: D:H.92, D:D.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Franklin, M.C. et al., Structural genomics for drug design against the pathogen Coxiella burnetii. Proteins (2015)

Release Date

2011-09-28

Peptides

Peptide chain release factor 3: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Peptide chain release factor 3