SMTL ID : 3tr6.1

Structure of a O-methyltransferase from Coxiella burnetii

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 4 residues within 4Å: Chain A: M.46, D.147, D.173, N.174 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.147, A:D.147, A:D.173, H2O.2 NI.3: 4 residues within 4Å: Chain B: M.46, D.147, D.173, N.174 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.147, B:D.147, B:D.173, H2O.6

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.2: 18 residues within 4Å: Chain A: M.46, Q.47, T.48, G.72, T.73, F.74, Y.77, S.78, D.96, V.97, D.98, P.124, A.125, Y.145, D.147, A.148, D.149, Y.156 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:F.74 Hydrogen bonds: A:T.48, A:T.48, A:F.74, A:Y.77, A:S.78, A:S.78, A:S.78, A:V.97, A:A.125, A:D.149, A:D.149, A:Y.156 Water bridges: A:T.75, A:A.79, A:A.79, A:N.152, A:N.152, A:N.152 SAH.4: 18 residues within 4Å: Chain B: M.46, Q.47, T.48, G.72, T.73, F.74, Y.77, S.78, D.96, V.97, D.98, P.124, A.125, Y.145, D.147, A.148, D.149, Y.156 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:F.74 Hydrogen bonds: B:T.48, B:T.48, B:T.48, B:F.74, B:Y.77, B:S.78, B:S.78, B:S.78, B:V.97, B:A.125, B:D.147, B:D.149, B:D.149, B:Y.156 Water bridges: B:T.75, B:A.79, B:A.79, B:N.152, B:N.152, B:N.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Franklin, M.C. et al., Structural genomics for drug design against the pathogen Coxiella burnetii. Proteins (2015)

Release Date

2011-09-28

Peptides

O-methyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

O-methyltransferase