SMTL ID : 3tri.1

Structure of a pyrroline-5-carboxylate reductase (proC) from Coxiella burnetii

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 27 residues within 4Å: Chain A: G.10, G.11, G.12, N.13, M.14, N.36, R.37, S.38, K.41, N.57, A.70, V.71, K.72, P.73, Q.75, M.78, V.79, L.97, A.98, V.99, M.120, P.121, T.123, G.175 Chain B: F.230, V.231 Ligands: PO4.7 17 PLIP interactions: 16 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.13, A:N.36, A:R.37, A:S.38, A:N.57, A:V.71, A:V.99, B:F.230 Water bridges: A:G.12, A:A.15, A:N.57, A:T.123 Salt bridges: A:R.37, A:K.41, A:K.41, A:K.72, A:K.72 NAP.5: 18 residues within 4Å: Chain B: G.10, G.12, N.13, M.14, N.36, R.37, S.38, K.41, N.57, A.70, V.71, K.72, P.73, Q.75, V.79, L.97, V.99, P.121 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:P.121 Hydrogen bonds: B:N.13, B:N.36, B:R.37, B:S.38, B:S.38, B:K.41, B:N.57, B:K.72, B:V.99 Water bridges: B:G.12, B:A.15, B:P.121, B:T.123 Salt bridges: B:R.37, B:K.41

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain A: A.217, L.218, T.220, E.221, Q.222 Chain B: E.207 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.220, A:E.221, B:E.207 PO4.3: 10 residues within 4Å: Chain A: N.5, I.6, T.7, N.30, R.31, I.32, C.33, G.60, N.63, A.64 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.6, A:T.7, A:T.7, A:N.63, A:N.63, A:N.63 PO4.4: 3 residues within 4Å: Chain A: E.190, E.193, Q.194 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.193, A:E.193, A:E.193 PO4.7: 6 residues within 4Å: Chain A: V.99, L.268 Chain B: S.233, G.236, T.237 Ligands: NAP.1 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.233, B:S.233, B:T.237 Water bridges: B:T.238

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 2 residues within 4Å: Chain B: D.28, N.30 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Franklin, M.C. et al., Structural genomics for drug design against the pathogen Coxiella burnetii. Proteins (2015)

Release Date

2011-09-28

Peptides

Pyrroline-5-carboxylate reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pyrroline-5-carboxylate reductase