SMTL ID : 3tsq.1

Crystal structure of E. coli HypF with ATP and Carbamoyl phosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.20, C.23, C.42, C.45 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.20, A:C.23, A:C.42, A:C.45 ZN.2: 4 residues within 4Å: Chain A: C.70, C.73, C.92, C.95 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.70, A:C.73, A:C.92, A:C.95 ZN.3: 4 residues within 4Å: Chain A: H.386, H.390, D.413, D.638 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.386, A:H.390, A:D.413, A:D.638

1 x CA0: 5'-O-[(S)-(carbamoyloxy)(hydroxy)phosphoryl]adenosine(Non-covalent)

CA0.4: 12 residues within 4Å: Chain A: R.156, K.159, P.160, L.188, L.205, E.207, V.208, T.232, S.233, N.235, V.274, R.283 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:K.159, A:K.159, A:E.207, A:G.209, A:T.232, A:S.233, A:N.235, A:N.235, A:R.283 Water bridges: A:R.156 Salt bridges: A:R.156, A:K.159, A:R.283

1 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 2 residues within 4Å: Chain A: G.170, Y.193 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:Y.193, H2O.2, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petkun, S. et al., Structure of Hydrogenase Maturation Protein HypF with Reaction Intermediates Shows Two Active Sites. Structure (2011)

Release Date

2011-12-28

Peptides

Transcriptional regulatory protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Transcriptional regulatory protein

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