SMTL ID : 3tsu.1

Crystal structure of E. coli HypF with AMP-PNP and carbamoyl phosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.20, C.23, C.42, C.45 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.20, A:C.23, A:C.42, A:C.45, H2O.5 ZN.2: 5 residues within 4Å: Chain A: R.33, C.70, C.73, C.92, C.95 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.70, A:C.73, A:C.92, A:C.95 ZN.3: 5 residues within 4Å: Chain A: H.386, H.390, D.413, D.638 Ligands: ADP.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.386, A:H.390, A:D.413, A:D.638

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 1 residues within 4Å: Chain A: Y.193 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.193, H2O.1

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.5: 19 residues within 4Å: Chain A: K.313, H.386, H.390, D.413, G.414, I.415, G.506, R.507, F.509, G.527, A.530, E.534, G.607, G.608, V.609, N.612, G.637, D.638 Ligands: ZN.3 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:G.414, A:I.415, A:I.415, A:I.415, A:R.507, A:E.534, A:G.608, A:N.612, A:D.638, A:D.638 Salt bridges: A:K.313, A:K.313, A:H.386, A:H.390 pi-Stacking: A:F.509

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.6: 16 residues within 4Å: Chain A: K.154, R.156, K.159, P.160, A.162, L.188, E.207, V.208, G.209, S.233, N.235, S.237, G.238, D.271, V.274, R.283 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:K.154, A:K.154, A:R.156, A:E.207, A:G.209, A:S.233, A:S.233, A:S.233, A:N.235, A:G.238, A:R.269, A:R.283, A:R.283 Salt bridges: A:K.154, A:R.156, A:K.159, A:R.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petkun, S. et al., Structure of Hydrogenase Maturation Protein HypF with Reaction Intermediates Shows Two Active Sites. Structure (2011)

Release Date

2011-12-28

Peptides

Transcriptional regulatory protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Transcriptional regulatory protein

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