SMTL ID : 3tt0.2 (1 other biounit)

Co-structure of Fibroblast Growth Factor Receptor 1 kinase domain with 3-(2,6-dichloro-3,5-dimethoxy-phenyl)-1-{6-[4-(4-ethyl-piperazin-1-yl)-phenylamino]-pyrimidin-4-yl}-1-methyl-urea (BGJ398)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x 07J: 3-(2,6-dichloro-3,5-dimethoxyphenyl)-1-(6-{[4-(4-ethylpiperazin-1-yl)phenyl]amino}pyrimidin-4-yl)-1-methylurea(Non-covalent)

07J.1: 18 residues within 4Å: Chain A: L.77, V.85, A.105, K.107, E.124, M.128, I.138, V.152, V.154, E.155, Y.156, A.157, G.160, E.164, L.223, A.233, D.234, F.235 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.77, A:L.223, A:L.223 Hydrogen bonds: A:A.157, A:A.157, A:D.234 Water bridges: A:K.107 Salt bridges: A:E.164

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: K.135, R.202 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.202 Salt bridges: A:K.135, A:R.202

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: K.159, Y.165, R.169, N.228 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.159, A:R.169, A:N.228, A:N.228 GOL.4: 4 residues within 4Å: Chain A: H.134, R.202, E.205, Y.206 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.202, A:E.205 GOL.5: 4 residues within 4Å: Chain A: R.170, G.290, G.291, S.292 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.170, A:R.170, A:R.170, A:S.292, A:S.292

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guagnano, V. et al., Discovery of 3-(2,6-dichloro-3,5-dimethoxy-phenyl)-1-{6-[4-(4-ethyl-piperazin-1-yl)-phenylamino]-pyrimidin-4-yl}-1-methyl-urea (NVP-BGJ398), a potent and selective inhibitor of the fibroblast growth factor receptor family of receptor tyrosine kinase. J.Med.Chem. (2011)

Release Date

2012-06-13

Peptides

Basic fibroblast growth factor receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Basic fibroblast growth factor receptor 1

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